Cluster: C129.CMAG_1_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C129_contig_2368 | C129_contig_2368_494 | 511794 | 513164 | + | 2.A.25.1.4 |
| pfam | C129_contig_2368 | C129_contig_2368_495 | 513406 | 513729 | + | Ribosomal_S30AE |
| NULL(UNKNOWN) | C129_contig_2368 | C129_contig_2368_496 | 513777 | 513920 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C129_contig_2368 | C129_contig_2368_497 | 513974 | 515368 | - | GH23 |
| TC | C129_contig_2368 | C129_contig_2368_498 | 515464 | 517302 | - | 3.A.18.1.1 |
Gene ID: C129_contig_2368_494
Type: TC
Location: 511794 - 513164 (+)
Type: TC
Location: 511794 - 513164 (+)
Gene ID: C129_contig_2368_495
Type: pfam
Location: 513406 - 513729 (+)
Type: pfam
Location: 513406 - 513729 (+)
Gene ID: C129_contig_2368_496
Type:
Location: 513777 - 513920 (-)
Type:
Location: 513777 - 513920 (-)
Gene ID: C129_contig_2368_497
Type: CAZyme
Location: 513974 - 515368 (-)
Type: CAZyme
Location: 513974 - 515368 (-)
Gene ID: C129_contig_2368_498
Type: TC
Location: 515464 - 517302 (-)
Type: TC
Location: 515464 - 517302 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_496 | vegan > omnivore | 1.25922 | 0.00918 |
| C129_contig_2368_496 | vegetarian > omnivore | 1.85185 | 0.01522 |
| C129_contig_2368_497 | vegetarian > omnivore | 1.65005 | 0.01522 |