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Cluster: BrooksB_2017_SRR5405894_bin.8_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_4 2099 4000 - GH2
TF BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_5 4116 5078 + HTH_AraC
TF BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_6 5141 6157 - HTH_AraC | HTH_AraC
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_7 6433 8118 + GH3
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_8 8135 10960 + CBM67 | GH78
pfam BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_9 10953 11618 + Hydrolase | HAD_2
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_10 11624 13186 + CBM91 | GH43_12
peptidase BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_11 13299 14015 - S09.UPW
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_12 14080 14907 - 4.A.6.1.19
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_13 14904 15719 - 4.A.6.1.9
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_14 15736 16218 - 4.A.6.1.9
TF BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_15 16518 19061 - TrmB
NULL(UNKNOWN) BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_16 19091 19354 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_17 19653 21266 - CBM91 | GH43_11
NULL(UNKNOWN) BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_18 21269 22078 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_19 22151 23284 - GH88
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_20 23281 25056 - GH154
pfam BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_21 25059 25469 - EIIA-man
NULL(UNKNOWN) BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_22 25953 26999 + NULL(UNKNOWN)
[View Structural Homologs]
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_23 27191 28033 - 4.A.6.1.19
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_24 28026 28883 - 4.A.6.1.22
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_25 28888 29376 - 4.A.6.1.9
pfam BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_26 29683 30489 - Hydrolase | S6PP | S6PP | Hydrolase_3
TC BrooksB_2017_SRR5405894_bin.8_k119_3854 BrooksB_2017_SRR5405894_bin.8_k119_3854_27 30505 33246 - 3.A.23.1.1
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_4
Type: CAZyme
Location: 2099 - 4000 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_5
Type: TF
Location: 4116 - 5078 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_6
Type: TF
Location: 5141 - 6157 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_7
Type: CAZyme
Location: 6433 - 8118 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_8
Type: CAZyme
Location: 8135 - 10960 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_9
Type: pfam
Location: 10953 - 11618 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_10
Type: CAZyme
Location: 11624 - 13186 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_11
Type: peptidase
Location: 13299 - 14015 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_12
Type: TC
Location: 14080 - 14907 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_13
Type: TC
Location: 14904 - 15719 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_14
Type: TC
Location: 15736 - 16218 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_15
Type: TF
Location: 16518 - 19061 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_16
Type:
Location: 19091 - 19354 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_17
Type: CAZyme
Location: 19653 - 21266 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_18
Type:
Location: 21269 - 22078 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_19
Type: CAZyme
Location: 22151 - 23284 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_20
Type: CAZyme
Location: 23281 - 25056 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_21
Type: pfam
Location: 25059 - 25469 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_22
Type:
Location: 25953 - 26999 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_23
Type: TC
Location: 27191 - 28033 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_24
Type: TC
Location: 28026 - 28883 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_25
Type: TC
Location: 28888 - 29376 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_26
Type: pfam
Location: 29683 - 30489 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_3854_27
Type: TC
Location: 30505 - 33246 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Enterococcaceae
→
Genus
Enterococcus_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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