Cluster: BrooksB_2017_SRR5405658_bin.3_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_00554
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_9460 | BrooksB_2017_SRR5405658_bin.3_k141_9460_4 | 4876 | 5814 | + | GT2 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_9460 | BrooksB_2017_SRR5405658_bin.3_k141_9460_5 | 5984 | 7717 | + | 3.A.1.135.5 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_9460 | BrooksB_2017_SRR5405658_bin.3_k141_9460_6 | 7714 | 9612 | + | 3.A.1.135.5 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405658_bin.3_k141_9460 | BrooksB_2017_SRR5405658_bin.3_k141_9460_7 | 9800 | 10171 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405658_bin.3_k141_9460 | BrooksB_2017_SRR5405658_bin.3_k141_9460_8 | 10149 | 10538 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_9460 | BrooksB_2017_SRR5405658_bin.3_k141_9460_9 | 10691 | 12313 | - | 3.A.1.5.2 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_9460_4
Type: CAZyme
Location: 4876 - 5814 (+)
Type: CAZyme
Location: 4876 - 5814 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_9460_5
Type: TC
Location: 5984 - 7717 (+)
Type: TC
Location: 5984 - 7717 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_9460_6
Type: TC
Location: 7714 - 9612 (+)
Type: TC
Location: 7714 - 9612 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_9460_7
Type:
Location: 9800 - 10171 (-)
Type:
Location: 9800 - 10171 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_9460_8
Type:
Location: 10149 - 10538 (-)
Type:
Location: 10149 - 10538 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_9460_9
Type: TC
Location: 10691 - 12313 (-)
Type: TC
Location: 10691 - 12313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.