Cluster: BackhedF_2015_ERR525949_bin.8_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: BackhedF_2015_ERR525949_bin.8
- CGC Family ID: CGCFAM_03356
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_20 | 22994 | 24058 | + | GT2 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_21 | 24081 | 25304 | + | GT4 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_22 | 25612 | 28398 | + | GH73 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_23 | 28421 | 30010 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_24 | 30021 | 31565 | + | 2.A.66.1.40 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_25 | 32094 | 33197 | - | Epimerase_2 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_26 | 33399 | 34511 | - | GT4 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_27 | 34920 | 35660 | + | IspD | CTP_transf_3 | NTP_transf_3 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_28 | 35648 | 36691 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_29 | 36684 | 37637 | + | GT2 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_30 | 37634 | 38470 | - | LicD |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_31 | 38525 | 39439 | - | GT2 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_32 | 39598 | 40302 | + | Acyl_transf_3 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_33 | 40669 | 41370 | + | GT2 |
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_20
Type: CAZyme
Location: 22994 - 24058 (+)
Type: CAZyme
Location: 22994 - 24058 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_21
Type: CAZyme
Location: 24081 - 25304 (+)
Type: CAZyme
Location: 24081 - 25304 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_22
Type: CAZyme
Location: 25612 - 28398 (+)
Type: CAZyme
Location: 25612 - 28398 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_23
Type:
Location: 28421 - 30010 (+)
Type:
Location: 28421 - 30010 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_24
Type: TC
Location: 30021 - 31565 (+)
Type: TC
Location: 30021 - 31565 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_25
Type: pfam
Location: 32094 - 33197 (-)
Type: pfam
Location: 32094 - 33197 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_26
Type: CAZyme
Location: 33399 - 34511 (-)
Type: CAZyme
Location: 33399 - 34511 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_27
Type: pfam
Location: 34920 - 35660 (+)
Type: pfam
Location: 34920 - 35660 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_28
Type: pfam
Location: 35648 - 36691 (+)
Type: pfam
Location: 35648 - 36691 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_29
Type: CAZyme
Location: 36684 - 37637 (+)
Type: CAZyme
Location: 36684 - 37637 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_30
Type: pfam
Location: 37634 - 38470 (-)
Type: pfam
Location: 37634 - 38470 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_31
Type: CAZyme
Location: 38525 - 39439 (-)
Type: CAZyme
Location: 38525 - 39439 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_32
Type: pfam
Location: 39598 - 40302 (+)
Type: pfam
Location: 39598 - 40302 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_33
Type: CAZyme
Location: 40669 - 41370 (+)
Type: CAZyme
Location: 40669 - 41370 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.