Cluster: BF109_134_sub_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: BF109_134_sub
- CGC Family ID: CGCFAM_07683
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_291553 | k141_291553_1 | 417 | 986 | + | 2.A.107.1.2 |
| pfam | k141_291553 | k141_291553_2 | 1121 | 3208 | - | Flg_new | Flg_new |
| pfam | k141_291553 | k141_291553_3 | 3280 | 3456 | - | DUF4250 |
| TC | k141_291553 | k141_291553_4 | 4134 | 4628 | + | 3.D.1.5.1 |
| TC | k141_291553 | k141_291553_5 | 4660 | 6558 | + | 3.D.1.5.1 |
| TC | k141_291553 | k141_291553_6 | 6573 | 8321 | + | 3.D.1.5.1 |
| NULL(UNKNOWN) | k141_291553 | k141_291553_7 | 8438 | 8659 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_291553 | k141_291553_8 | 8717 | 9334 | + | Rubrerythrin | RUBY_RBDX |
| TC | k141_291553 | k141_291553_9 | 9377 | 10747 | - | 2.A.66.1.28 |
| TC | k141_291553 | k141_291553_10 | 10833 | 11468 | - | 9.B.31.1.2 |
| STP | k141_291553 | k141_291553_11 | 11714 | 12274 | + | Sigma70_r2 | Sigma70_r4_2 |
| NULL(UNKNOWN) | k141_291553 | k141_291553_12 | 12286 | 14253 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_291553 | k141_291553_13 | 14294 | 15247 | - | GH5_37 |
Gene ID: k141_291553_1
Type: TC
Location: 417 - 986 (+)
Type: TC
Location: 417 - 986 (+)
Gene ID: k141_291553_2
Type: pfam
Location: 1121 - 3208 (-)
Type: pfam
Location: 1121 - 3208 (-)
Gene ID: k141_291553_3
Type: pfam
Location: 3280 - 3456 (-)
Type: pfam
Location: 3280 - 3456 (-)
Gene ID: k141_291553_4
Type: TC
Location: 4134 - 4628 (+)
Type: TC
Location: 4134 - 4628 (+)
Gene ID: k141_291553_5
Type: TC
Location: 4660 - 6558 (+)
Type: TC
Location: 4660 - 6558 (+)
Gene ID: k141_291553_6
Type: TC
Location: 6573 - 8321 (+)
Type: TC
Location: 6573 - 8321 (+)
Gene ID: k141_291553_7
Type:
Location: 8438 - 8659 (+)
Type:
Location: 8438 - 8659 (+)
Gene ID: k141_291553_8
Type: pfam
Location: 8717 - 9334 (+)
Type: pfam
Location: 8717 - 9334 (+)
Gene ID: k141_291553_9
Type: TC
Location: 9377 - 10747 (-)
Type: TC
Location: 9377 - 10747 (-)
Gene ID: k141_291553_10
Type: TC
Location: 10833 - 11468 (-)
Type: TC
Location: 10833 - 11468 (-)
Gene ID: k141_291553_11
Type: STP
Location: 11714 - 12274 (+)
Type: STP
Location: 11714 - 12274 (+)
Gene ID: k141_291553_12
Type:
Location: 12286 - 14253 (+)
Type:
Location: 12286 - 14253 (+)
Gene ID: k141_291553_13
Type: CAZyme
Location: 14294 - 15247 (-)
Type: CAZyme
Location: 14294 - 15247 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus flavefaciens_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.