Cluster: B65.bin_10_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_03215
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_71 | B65_contig_71_460 | 515835 | 517340 | - | GH51_1 |
| CAZyme | B65_contig_71 | B65_contig_71_461 | 517357 | 518319 | - | GH43_26 |
| TC | B65_contig_71 | B65_contig_71_462 | 518504 | 519889 | - | 2.A.25.1.4 |
| CAZyme | B65_contig_71 | B65_contig_71_463 | 520002 | 521555 | - | GH43_4 |
| pfam | B65_contig_71 | B65_contig_71_464 | 521655 | 522653 | - | Dus |
| pfam | B65_contig_71 | B65_contig_71_465 | 522664 | 525018 | - | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | Phage_lysozyme2 | Flg_new_2 | Flg_new_2 | Flg_new_2 |
| CAZyme | B65_contig_71 | B65_contig_71_466 | 525065 | 529255 | - | GH25 |
| TC | B65_contig_71 | B65_contig_71_467 | 529401 | 531215 | - | 3.A.1.111.2 |
| TC | B65_contig_71 | B65_contig_71_468 | 531190 | 533046 | - | 3.A.1.106.1 |
| STP | B65_contig_71 | B65_contig_71_469 | 533249 | 533911 | - | HATPase_c |
| TF | B65_contig_71 | B65_contig_71_470 | 533908 | 534651 | - | LytTR |
| TC | B65_contig_71 | B65_contig_71_471 | 534756 | 536192 | - | 1.B.52.2.2 |
Gene ID: B65_contig_71_460
Type: CAZyme
Location: 515835 - 517340 (-)
Type: CAZyme
Location: 515835 - 517340 (-)
Gene ID: B65_contig_71_461
Type: CAZyme
Location: 517357 - 518319 (-)
Type: CAZyme
Location: 517357 - 518319 (-)
Gene ID: B65_contig_71_462
Type: TC
Location: 518504 - 519889 (-)
Type: TC
Location: 518504 - 519889 (-)
Gene ID: B65_contig_71_463
Type: CAZyme
Location: 520002 - 521555 (-)
Type: CAZyme
Location: 520002 - 521555 (-)
Gene ID: B65_contig_71_464
Type: pfam
Location: 521655 - 522653 (-)
Type: pfam
Location: 521655 - 522653 (-)
Gene ID: B65_contig_71_465
Type: pfam
Location: 522664 - 525018 (-)
Type: pfam
Location: 522664 - 525018 (-)
Gene ID: B65_contig_71_466
Type: CAZyme
Location: 525065 - 529255 (-)
Type: CAZyme
Location: 525065 - 529255 (-)
Gene ID: B65_contig_71_467
Type: TC
Location: 529401 - 531215 (-)
Type: TC
Location: 529401 - 531215 (-)
Gene ID: B65_contig_71_468
Type: TC
Location: 531190 - 533046 (-)
Type: TC
Location: 531190 - 533046 (-)
Gene ID: B65_contig_71_469
Type: STP
Location: 533249 - 533911 (-)
Type: STP
Location: 533249 - 533911 (-)
Gene ID: B65_contig_71_470
Type: TF
Location: 533908 - 534651 (-)
Type: TF
Location: 533908 - 534651 (-)
Gene ID: B65_contig_71_471
Type: TC
Location: 534756 - 536192 (-)
Type: TC
Location: 534756 - 536192 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_462 | vegetarian > omnivore | 1.31222 | 0.00102 |
| B65_contig_71_463 | vegan > omnivore | 1.09932 | 0.00484 |
| B65_contig_71_463 | vegetarian > omnivore | 1.06598 | 0.00102 |
| B65_contig_71_469 | vegan > omnivore | 1.04858 | 0.00484 |
| B65_contig_71_470 | vegetarian > omnivore | 1.62365 | 0.00102 |
| B65_contig_71_470 | vegan > omnivore | 1.43405 | 0.00484 |