Cluster: B65.bin_10_CGC54
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_00747
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B65_contig_437 | B65_contig_437_1441 | 1603433 | 1604329 | - | 3.A.1.1.39 |
| TC | B65_contig_437 | B65_contig_437_1442 | 1604331 | 1605263 | - | 3.A.1.1.11 |
| STP | B65_contig_437 | B65_contig_437_1443 | 1605296 | 1608265 | - | SBP_bac_1 |
| NULL(UNKNOWN) | B65_contig_437 | B65_contig_437_1444 | 1609096 | 1609248 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B65_contig_437 | B65_contig_437_1445 | 1609305 | 1612169 | - | GH2 |
Gene ID: B65_contig_437_1441
Type: TC
Location: 1603433 - 1604329 (-)
Type: TC
Location: 1603433 - 1604329 (-)
Gene ID: B65_contig_437_1442
Type: TC
Location: 1604331 - 1605263 (-)
Type: TC
Location: 1604331 - 1605263 (-)
Gene ID: B65_contig_437_1443
Type: STP
Location: 1605296 - 1608265 (-)
Type: STP
Location: 1605296 - 1608265 (-)
Gene ID: B65_contig_437_1444
Type:
Location: 1609096 - 1609248 (-)
Type:
Location: 1609096 - 1609248 (-)
Gene ID: B65_contig_437_1445
Type: CAZyme
Location: 1609305 - 1612169 (-)
Type: CAZyme
Location: 1609305 - 1612169 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_437_1441 | vegetarian > vegan | 1.38114 | 0.00455 |
| B65_contig_437_1444 | vegetarian > omnivore | 1.47051 | 0.00102 |