Cluster: B65.bin_10_CGC52
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_04792
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_437 | B65_contig_437_1364 | 1514397 | 1516550 | - | GH3 |
| CAZyme | B65_contig_437 | B65_contig_437_1365 | 1516550 | 1518889 | - | GH31_3 |
| TF | B65_contig_437 | B65_contig_437_1366 | 1519133 | 1520686 | + | HTH_AraC | HTH_AraC |
| TC | B65_contig_437 | B65_contig_437_1367 | 1520853 | 1522586 | - | 3.A.1.106.3 |
| TC | B65_contig_437 | B65_contig_437_1368 | 1522588 | 1524342 | - | 3.A.1.106.3 |
Gene ID: B65_contig_437_1364
Type: CAZyme
Location: 1514397 - 1516550 (-)
Type: CAZyme
Location: 1514397 - 1516550 (-)
Gene ID: B65_contig_437_1365
Type: CAZyme
Location: 1516550 - 1518889 (-)
Type: CAZyme
Location: 1516550 - 1518889 (-)
Gene ID: B65_contig_437_1366
Type: TF
Location: 1519133 - 1520686 (+)
Type: TF
Location: 1519133 - 1520686 (+)
Gene ID: B65_contig_437_1367
Type: TC
Location: 1520853 - 1522586 (-)
Type: TC
Location: 1520853 - 1522586 (-)
Gene ID: B65_contig_437_1368
Type: TC
Location: 1522588 - 1524342 (-)
Type: TC
Location: 1522588 - 1524342 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_437_1364 | vegetarian > omnivore | 1.14706 | 0.00102 |
| B65_contig_437_1368 | vegan > omnivore | 1.70709 | 0.00484 |
| B65_contig_437_1368 | vegetarian > omnivore | 1.18126 | 0.00102 |