Cluster: B65.bin_10_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: B65.bin_10
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_71 | B65_contig_71_318 | 353174 | 354145 | - | GT2 |
| pfam | B65_contig_71 | B65_contig_71_319 | 354145 | 355248 | - | LytR_cpsA_psr |
| TC | B65_contig_71 | B65_contig_71_320 | 355261 | 356679 | - | 9.B.18.1.1 |
| CAZyme | B65_contig_71 | B65_contig_71_321 | 356827 | 357783 | - | GT2 |
| CAZyme | B65_contig_71 | B65_contig_71_322 | 357795 | 359771 | - | GT2 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_323 | 359738 | 359938 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B65_contig_71 | B65_contig_71_324 | 359970 | 362459 | - | GT2 | GT2 |
Gene ID: B65_contig_71_318
Type: CAZyme
Location: 353174 - 354145 (-)
Type: CAZyme
Location: 353174 - 354145 (-)
Gene ID: B65_contig_71_319
Type: pfam
Location: 354145 - 355248 (-)
Type: pfam
Location: 354145 - 355248 (-)
Gene ID: B65_contig_71_320
Type: TC
Location: 355261 - 356679 (-)
Type: TC
Location: 355261 - 356679 (-)
Gene ID: B65_contig_71_321
Type: CAZyme
Location: 356827 - 357783 (-)
Type: CAZyme
Location: 356827 - 357783 (-)
Gene ID: B65_contig_71_322
Type: CAZyme
Location: 357795 - 359771 (-)
Type: CAZyme
Location: 357795 - 359771 (-)
Gene ID: B65_contig_71_323
Type:
Location: 359738 - 359938 (-)
Type:
Location: 359738 - 359938 (-)
Gene ID: B65_contig_71_324
Type: CAZyme
Location: 359970 - 362459 (-)
Type: CAZyme
Location: 359970 - 362459 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_318 | vegetarian > omnivore | 1.17052 | 0.00102 |
| B65_contig_71_319 | vegetarian > omnivore | 1.42300 | 0.00102 |
| B65_contig_71_321 | vegetarian > omnivore | 1.32042 | 0.00102 |
| B65_contig_71_322 | vegetarian > vegan | 1.52295 | 0.00455 |
| B65_contig_71_322 | vegetarian > omnivore | 2.06015 | 0.00102 |
| B65_contig_71_323 | vegetarian > vegan | 1.05948 | 0.00455 |
| B65_contig_71_323 | vegan > omnivore | 1.72654 | 0.00484 |
| B65_contig_71_323 | vegetarian > omnivore | 2.78602 | 0.00102 |
| B65_contig_71_324 | vegetarian > omnivore | 1.27984 | 0.00102 |