Cluster: B65.bin_10_CGC49
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_00208
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B65_contig_437 | B65_contig_437_1217 | 1353378 | 1355144 | - | 3.A.1.106.9 |
| NULL(UNKNOWN) | B65_contig_437 | B65_contig_437_1218 | 1355510 | 1355896 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B65_contig_437 | B65_contig_437_1219 | 1355964 | 1357019 | - | 4.D.2.1.5 |
| NULL(UNKNOWN) | B65_contig_437 | B65_contig_437_1220 | 1357009 | 1357563 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B65_contig_437 | B65_contig_437_1221 | 1357603 | 1358649 | - | GT2 |
| pfam | B65_contig_437 | B65_contig_437_1222 | 1358764 | 1360185 | - | DUF4832 | DUF4874 |
| pfam | B65_contig_437 | B65_contig_437_1223 | 1360187 | 1361452 | - | NTP_transf_5 |
| TC | B65_contig_437 | B65_contig_437_1224 | 1361436 | 1362980 | - | 2.A.66.1.40 |
| CAZyme | B65_contig_437 | B65_contig_437_1225 | 1363026 | 1364012 | - | GT2 |
| pfam | B65_contig_437 | B65_contig_437_1226 | 1364032 | 1365273 | - | DUF4832 | DUF4874 |
| CAZyme | B65_contig_437 | B65_contig_437_1227 | 1365248 | 1366039 | - | GT2 |
| CAZyme | B65_contig_437 | B65_contig_437_1228 | 1366081 | 1367304 | - | GT4 |
| NULL(UNKNOWN) | B65_contig_437 | B65_contig_437_1229 | 1367276 | 1367659 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B65_contig_437 | B65_contig_437_1230 | 1367656 | 1369110 | - | PelG |
| CAZyme | B65_contig_437 | B65_contig_437_1231 | 1369114 | 1370556 | - | GT4 |
Gene ID: B65_contig_437_1217
Type: TC
Location: 1353378 - 1355144 (-)
Type: TC
Location: 1353378 - 1355144 (-)
Gene ID: B65_contig_437_1218
Type:
Location: 1355510 - 1355896 (-)
Type:
Location: 1355510 - 1355896 (-)
Gene ID: B65_contig_437_1219
Type: TC
Location: 1355964 - 1357019 (-)
Type: TC
Location: 1355964 - 1357019 (-)
Gene ID: B65_contig_437_1220
Type:
Location: 1357009 - 1357563 (-)
Type:
Location: 1357009 - 1357563 (-)
Gene ID: B65_contig_437_1221
Type: CAZyme
Location: 1357603 - 1358649 (-)
Type: CAZyme
Location: 1357603 - 1358649 (-)
Gene ID: B65_contig_437_1222
Type: pfam
Location: 1358764 - 1360185 (-)
Type: pfam
Location: 1358764 - 1360185 (-)
Gene ID: B65_contig_437_1223
Type: pfam
Location: 1360187 - 1361452 (-)
Type: pfam
Location: 1360187 - 1361452 (-)
Gene ID: B65_contig_437_1224
Type: TC
Location: 1361436 - 1362980 (-)
Type: TC
Location: 1361436 - 1362980 (-)
Gene ID: B65_contig_437_1225
Type: CAZyme
Location: 1363026 - 1364012 (-)
Type: CAZyme
Location: 1363026 - 1364012 (-)
Gene ID: B65_contig_437_1226
Type: pfam
Location: 1364032 - 1365273 (-)
Type: pfam
Location: 1364032 - 1365273 (-)
Gene ID: B65_contig_437_1227
Type: CAZyme
Location: 1365248 - 1366039 (-)
Type: CAZyme
Location: 1365248 - 1366039 (-)
Gene ID: B65_contig_437_1228
Type: CAZyme
Location: 1366081 - 1367304 (-)
Type: CAZyme
Location: 1366081 - 1367304 (-)
Gene ID: B65_contig_437_1229
Type:
Location: 1367276 - 1367659 (-)
Type:
Location: 1367276 - 1367659 (-)
Gene ID: B65_contig_437_1230
Type: pfam
Location: 1367656 - 1369110 (-)
Type: pfam
Location: 1367656 - 1369110 (-)
Gene ID: B65_contig_437_1231
Type: CAZyme
Location: 1369114 - 1370556 (-)
Type: CAZyme
Location: 1369114 - 1370556 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_437_1217 | vegetarian > omnivore | 1.51459 | 0.00102 |
| B65_contig_437_1222 | vegan > omnivore | 1.89685 | 0.00484 |
| B65_contig_437_1222 | vegetarian > omnivore | 2.33869 | 0.00102 |
| B65_contig_437_1223 | vegan > omnivore | 1.42117 | 0.00484 |
| B65_contig_437_1225 | vegetarian > omnivore | 1.54464 | 0.00102 |
| B65_contig_437_1225 | vegan > omnivore | 1.01211 | 0.00484 |
| B65_contig_437_1227 | vegetarian > omnivore | 1.65966 | 0.00102 |
| B65_contig_437_1227 | vegan > omnivore | 1.46100 | 0.00484 |
| B65_contig_437_1228 | vegetarian > omnivore | 1.29033 | 0.00102 |
| B65_contig_437_1229 | vegetarian > vegan | 1.04875 | 0.00455 |
| B65_contig_437_1231 | vegetarian > omnivore | 1.51701 | 0.00102 |
| B65_contig_437_1231 | vegan > omnivore | 1.14462 | 0.00484 |