Cluster: B65.bin_10_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: B65.bin_10
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_437 | B65_contig_437_627 | 727732 | 729729 | + | GH51_2 |
| TC | B65_contig_437 | B65_contig_437_628 | 729778 | 731604 | - | 8.A.59.2.1 |
| TF | B65_contig_437 | B65_contig_437_629 | 731617 | 733215 | - | HTH_AraC |
| STP | B65_contig_437 | B65_contig_437_630 | 733469 | 734887 | + | SBP_bac_1 |
| TC | B65_contig_437 | B65_contig_437_631 | 735059 | 736015 | + | 3.A.1.1.20 |
| TC | B65_contig_437 | B65_contig_437_632 | 736029 | 736907 | + | 3.A.1.1.24 |
| pfam | B65_contig_437 | B65_contig_437_633 | 736910 | 737158 | + | NifU |
| CAZyme | B65_contig_437 | B65_contig_437_634 | 737172 | 740258 | + | GH38 |
| CAZyme | B65_contig_437 | B65_contig_437_635 | 740258 | 743365 | + | GH2 |
| STP | B65_contig_437 | B65_contig_437_636 | 743634 | 743846 | + | FeoA |
| STP | B65_contig_437 | B65_contig_437_637 | 743899 | 744120 | + | FeoA |
| TC | B65_contig_437 | B65_contig_437_638 | 744255 | 746447 | + | 9.A.8.1.6 |
Gene ID: B65_contig_437_627
Type: CAZyme
Location: 727732 - 729729 (+)
Type: CAZyme
Location: 727732 - 729729 (+)
Gene ID: B65_contig_437_628
Type: TC
Location: 729778 - 731604 (-)
Type: TC
Location: 729778 - 731604 (-)
Gene ID: B65_contig_437_629
Type: TF
Location: 731617 - 733215 (-)
Type: TF
Location: 731617 - 733215 (-)
Gene ID: B65_contig_437_630
Type: STP
Location: 733469 - 734887 (+)
Type: STP
Location: 733469 - 734887 (+)
Gene ID: B65_contig_437_631
Type: TC
Location: 735059 - 736015 (+)
Type: TC
Location: 735059 - 736015 (+)
Gene ID: B65_contig_437_632
Type: TC
Location: 736029 - 736907 (+)
Type: TC
Location: 736029 - 736907 (+)
Gene ID: B65_contig_437_633
Type: pfam
Location: 736910 - 737158 (+)
Type: pfam
Location: 736910 - 737158 (+)
Gene ID: B65_contig_437_634
Type: CAZyme
Location: 737172 - 740258 (+)
Type: CAZyme
Location: 737172 - 740258 (+)
Gene ID: B65_contig_437_635
Type: CAZyme
Location: 740258 - 743365 (+)
Type: CAZyme
Location: 740258 - 743365 (+)
Gene ID: B65_contig_437_636
Type: STP
Location: 743634 - 743846 (+)
Type: STP
Location: 743634 - 743846 (+)
Gene ID: B65_contig_437_637
Type: STP
Location: 743899 - 744120 (+)
Type: STP
Location: 743899 - 744120 (+)
Gene ID: B65_contig_437_638
Type: TC
Location: 744255 - 746447 (+)
Type: TC
Location: 744255 - 746447 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_437_627 | vegetarian > omnivore | 1.00393 | 0.00102 |
| B65_contig_437_628 | vegetarian > omnivore | 1.10509 | 0.00102 |
| B65_contig_437_629 | vegetarian > omnivore | 1.71826 | 0.00102 |
| B65_contig_437_629 | vegetarian > vegan | 1.02792 | 0.00455 |
| B65_contig_437_630 | vegetarian > omnivore | 1.37134 | 0.00102 |
| B65_contig_437_632 | vegan > omnivore | 1.87823 | 0.00484 |
| B65_contig_437_632 | vegetarian > omnivore | 1.78264 | 0.00102 |
| B65_contig_437_633 | vegan > omnivore | 2.13204 | 0.00484 |
| B65_contig_437_633 | vegetarian > omnivore | 1.76412 | 0.00102 |
| B65_contig_437_634 | vegetarian > vegan | 1.68617 | 0.00455 |
| B65_contig_437_634 | vegetarian > omnivore | 2.51947 | 0.00102 |
| B65_contig_437_635 | vegetarian > omnivore | 1.83867 | 0.00102 |
| B65_contig_437_636 | vegetarian > vegan | 1.84456 | 0.00455 |
| B65_contig_437_636 | vegetarian > omnivore | 2.20608 | 0.00102 |