Cluster: B65.bin_10_CGC31
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: B65.bin_10
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B65_contig_71 | B65_contig_71_2083 | 2262188 | 2264056 | + | 9.B.18.2.1 |
| pfam | B65_contig_71 | B65_contig_71_2084 | 2264069 | 2265352 | + | AAA_15 | AAA_21 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_2085 | 2265396 | 2265842 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B65_contig_71 | B65_contig_71_2086 | 2265839 | 2266447 | + | 9.B.18.1.1 |
| pfam | B65_contig_71 | B65_contig_71_2087 | 2266444 | 2267355 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind |
| pfam | B65_contig_71 | B65_contig_71_2088 | 2267443 | 2267589 | + | DUF2813 | AAA_15 | AAA_23 |
| CAZyme | B65_contig_71 | B65_contig_71_2089 | 2267702 | 2268853 | + | GT4 |
| CAZyme | B65_contig_71 | B65_contig_71_2090 | 2268859 | 2269653 | + | GT2 |
| TC | B65_contig_71 | B65_contig_71_2091 | 2269711 | 2270538 | + | 3.A.1.103.4 |
| TC | B65_contig_71 | B65_contig_71_2092 | 2270549 | 2271286 | + | 3.A.1.103.1 |
| CAZyme | B65_contig_71 | B65_contig_71_2093 | 2271310 | 2273139 | + | GT111 | GT8 |
| pfam | B65_contig_71 | B65_contig_71_2094 | 2273156 | 2274253 | + | FAD_binding_2 | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | B65_contig_71 | B65_contig_71_2095 | 2274256 | 2276112 | + | GT111 | GT8 |
| CAZyme | B65_contig_71 | B65_contig_71_2096 | 2276128 | 2277096 | + | GT2 |
| CAZyme | B65_contig_71 | B65_contig_71_2097 | 2277093 | 2278358 | + | GT2 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_2098 | 2278386 | 2278772 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B65_contig_71 | B65_contig_71_2099 | 2278821 | 2281391 | + | 9.B.97.6.2 |
| TC | B65_contig_71 | B65_contig_71_2100 | 2281707 | 2284286 | + | 9.B.97.6.1 |
Gene ID: B65_contig_71_2083
Type: TC
Location: 2262188 - 2264056 (+)
Type: TC
Location: 2262188 - 2264056 (+)
Gene ID: B65_contig_71_2084
Type: pfam
Location: 2264069 - 2265352 (+)
Type: pfam
Location: 2264069 - 2265352 (+)
Gene ID: B65_contig_71_2085
Type:
Location: 2265396 - 2265842 (+)
Type:
Location: 2265396 - 2265842 (+)
Gene ID: B65_contig_71_2086
Type: TC
Location: 2265839 - 2266447 (+)
Type: TC
Location: 2265839 - 2266447 (+)
Gene ID: B65_contig_71_2087
Type: pfam
Location: 2266444 - 2267355 (+)
Type: pfam
Location: 2266444 - 2267355 (+)
Gene ID: B65_contig_71_2088
Type: pfam
Location: 2267443 - 2267589 (+)
Type: pfam
Location: 2267443 - 2267589 (+)
Gene ID: B65_contig_71_2089
Type: CAZyme
Location: 2267702 - 2268853 (+)
Type: CAZyme
Location: 2267702 - 2268853 (+)
Gene ID: B65_contig_71_2090
Type: CAZyme
Location: 2268859 - 2269653 (+)
Type: CAZyme
Location: 2268859 - 2269653 (+)
Gene ID: B65_contig_71_2091
Type: TC
Location: 2269711 - 2270538 (+)
Type: TC
Location: 2269711 - 2270538 (+)
Gene ID: B65_contig_71_2092
Type: TC
Location: 2270549 - 2271286 (+)
Type: TC
Location: 2270549 - 2271286 (+)
Gene ID: B65_contig_71_2093
Type: CAZyme
Location: 2271310 - 2273139 (+)
Type: CAZyme
Location: 2271310 - 2273139 (+)
Gene ID: B65_contig_71_2094
Type: pfam
Location: 2273156 - 2274253 (+)
Type: pfam
Location: 2273156 - 2274253 (+)
Gene ID: B65_contig_71_2095
Type: CAZyme
Location: 2274256 - 2276112 (+)
Type: CAZyme
Location: 2274256 - 2276112 (+)
Gene ID: B65_contig_71_2096
Type: CAZyme
Location: 2276128 - 2277096 (+)
Type: CAZyme
Location: 2276128 - 2277096 (+)
Gene ID: B65_contig_71_2097
Type: CAZyme
Location: 2277093 - 2278358 (+)
Type: CAZyme
Location: 2277093 - 2278358 (+)
Gene ID: B65_contig_71_2098
Type:
Location: 2278386 - 2278772 (+)
Type:
Location: 2278386 - 2278772 (+)
Gene ID: B65_contig_71_2099
Type: TC
Location: 2278821 - 2281391 (+)
Type: TC
Location: 2278821 - 2281391 (+)
Gene ID: B65_contig_71_2100
Type: TC
Location: 2281707 - 2284286 (+)
Type: TC
Location: 2281707 - 2284286 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_2084 | vegan > omnivore | 1.25108 | 0.00484 |
| B65_contig_71_2084 | vegetarian > omnivore | 1.30764 | 0.00102 |
| B65_contig_71_2086 | vegan > omnivore | 1.37803 | 0.00484 |
| B65_contig_71_2086 | vegetarian > omnivore | 1.19282 | 0.00102 |
| B65_contig_71_2087 | vegan > omnivore | 1.72099 | 0.00484 |