Cluster: B65.bin_10_CGC27
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_00161
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B65_contig_71 | B65_contig_71_1855 | 2003770 | 2005461 | + | 2.A.114.1.3 |
| pfam | B65_contig_71 | B65_contig_71_1856 | 2005608 | 2006180 | - | DDE_Tnp_1 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_1857 | 2006159 | 2007334 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B65_contig_71 | B65_contig_71_1858 | 2007555 | 2008280 | + | GT26 |
| pfam | B65_contig_71 | B65_contig_71_1859 | 2008289 | 2009164 | + | YitT_membrane | DUF2179 |
| pfam | B65_contig_71 | B65_contig_71_1860 | 2009457 | 2010545 | + | HTH_30 | GGDEF_2 |
| TC | B65_contig_71 | B65_contig_71_1861 | 2010561 | 2011319 | + | 3.A.1.140.1 |
| pfam | B65_contig_71 | B65_contig_71_1862 | 2011309 | 2012217 | + | FtsX | FtsX_ECD |
| STP | B65_contig_71 | B65_contig_71_1863 | 2012214 | 2013479 | + | Peptidase_M23 |
| TC | B65_contig_71 | B65_contig_71_1864 | 2013799 | 2015094 | + | 9.B.174.1.1 |
Gene ID: B65_contig_71_1855
Type: TC
Location: 2003770 - 2005461 (+)
Type: TC
Location: 2003770 - 2005461 (+)
Gene ID: B65_contig_71_1856
Type: pfam
Location: 2005608 - 2006180 (-)
Type: pfam
Location: 2005608 - 2006180 (-)
Gene ID: B65_contig_71_1857
Type:
Location: 2006159 - 2007334 (-)
Type:
Location: 2006159 - 2007334 (-)
Gene ID: B65_contig_71_1858
Type: CAZyme
Location: 2007555 - 2008280 (+)
Type: CAZyme
Location: 2007555 - 2008280 (+)
Gene ID: B65_contig_71_1859
Type: pfam
Location: 2008289 - 2009164 (+)
Type: pfam
Location: 2008289 - 2009164 (+)
Gene ID: B65_contig_71_1860
Type: pfam
Location: 2009457 - 2010545 (+)
Type: pfam
Location: 2009457 - 2010545 (+)
Gene ID: B65_contig_71_1861
Type: TC
Location: 2010561 - 2011319 (+)
Type: TC
Location: 2010561 - 2011319 (+)
Gene ID: B65_contig_71_1862
Type: pfam
Location: 2011309 - 2012217 (+)
Type: pfam
Location: 2011309 - 2012217 (+)
Gene ID: B65_contig_71_1863
Type: STP
Location: 2012214 - 2013479 (+)
Type: STP
Location: 2012214 - 2013479 (+)
Gene ID: B65_contig_71_1864
Type: TC
Location: 2013799 - 2015094 (+)
Type: TC
Location: 2013799 - 2015094 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_1856 | vegetarian > omnivore | 1.95747 | 0.00102 |
| B65_contig_71_1856 | vegan > omnivore | 1.05459 | 0.00484 |
| B65_contig_71_1857 | vegetarian > omnivore | 1.37033 | 0.00102 |
| B65_contig_71_1857 | vegetarian > vegan | 1.03404 | 0.00455 |
| B65_contig_71_1864 | vegetarian > omnivore | 1.14771 | 0.00102 |