Cluster: B65.bin_10_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_04592
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B65_contig_71 | B65_contig_71_1622 | 1748087 | 1749589 | + | 3.A.2.1.5 |
| TC | B65_contig_71 | B65_contig_71_1623 | 1749596 | 1750489 | + | 3.A.2.1.5 |
| TC | B65_contig_71 | B65_contig_71_1624 | 1750510 | 1751916 | + | 3.A.2.1.5 |
| TC | B65_contig_71 | B65_contig_71_1625 | 1751928 | 1752347 | + | 3.A.2.1.5 |
| TF | B65_contig_71 | B65_contig_71_1626 | 1752416 | 1753243 | - | HTH_AraC |
| CAZyme | B65_contig_71 | B65_contig_71_1627 | 1754274 | 1756691 | + | GH3 |
| CAZyme | B65_contig_71 | B65_contig_71_1628 | 1756878 | 1759682 | + | GH3 |
| CAZyme | B65_contig_71 | B65_contig_71_1629 | 1759875 | 1763819 | + | CBM23 | CBM27 | GH26 |
| TC | B65_contig_71 | B65_contig_71_1630 | 1763955 | 1764698 | - | 3.A.1.3.14 |
| TC | B65_contig_71 | B65_contig_71_1631 | 1764708 | 1765400 | - | 3.A.1.3.14 |
| TC | B65_contig_71 | B65_contig_71_1632 | 1765422 | 1766276 | - | 3.A.1.3.14 |
| STP | B65_contig_71 | B65_contig_71_1633 | 1766456 | 1768387 | - | EAL |
| CAZyme | B65_contig_71 | B65_contig_71_1634 | 1768449 | 1770722 | + | CBM61 | GH53 |
| TC | B65_contig_71 | B65_contig_71_1635 | 1771006 | 1773123 | + | 1.B.52.2.2 |
Gene ID: B65_contig_71_1622
Type: TC
Location: 1748087 - 1749589 (+)
Type: TC
Location: 1748087 - 1749589 (+)
Gene ID: B65_contig_71_1623
Type: TC
Location: 1749596 - 1750489 (+)
Type: TC
Location: 1749596 - 1750489 (+)
Gene ID: B65_contig_71_1624
Type: TC
Location: 1750510 - 1751916 (+)
Type: TC
Location: 1750510 - 1751916 (+)
Gene ID: B65_contig_71_1625
Type: TC
Location: 1751928 - 1752347 (+)
Type: TC
Location: 1751928 - 1752347 (+)
Gene ID: B65_contig_71_1626
Type: TF
Location: 1752416 - 1753243 (-)
Type: TF
Location: 1752416 - 1753243 (-)
Gene ID: B65_contig_71_1627
Type: CAZyme
Location: 1754274 - 1756691 (+)
Type: CAZyme
Location: 1754274 - 1756691 (+)
Gene ID: B65_contig_71_1628
Type: CAZyme
Location: 1756878 - 1759682 (+)
Type: CAZyme
Location: 1756878 - 1759682 (+)
Gene ID: B65_contig_71_1629
Type: CAZyme
Location: 1759875 - 1763819 (+)
Type: CAZyme
Location: 1759875 - 1763819 (+)
Gene ID: B65_contig_71_1630
Type: TC
Location: 1763955 - 1764698 (-)
Type: TC
Location: 1763955 - 1764698 (-)
Gene ID: B65_contig_71_1631
Type: TC
Location: 1764708 - 1765400 (-)
Type: TC
Location: 1764708 - 1765400 (-)
Gene ID: B65_contig_71_1632
Type: TC
Location: 1765422 - 1766276 (-)
Type: TC
Location: 1765422 - 1766276 (-)
Gene ID: B65_contig_71_1633
Type: STP
Location: 1766456 - 1768387 (-)
Type: STP
Location: 1766456 - 1768387 (-)
Gene ID: B65_contig_71_1634
Type: CAZyme
Location: 1768449 - 1770722 (+)
Type: CAZyme
Location: 1768449 - 1770722 (+)
Gene ID: B65_contig_71_1635
Type: TC
Location: 1771006 - 1773123 (+)
Type: TC
Location: 1771006 - 1773123 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_1623 | vegetarian > omnivore | 1.47125 | 0.00102 |
| B65_contig_71_1625 | vegetarian > omnivore | 1.10760 | 0.00102 |
| B65_contig_71_1625 | vegetarian > vegan | 1.63837 | 0.00455 |
| B65_contig_71_1631 | vegan > omnivore | 1.40567 | 0.00484 |
| B65_contig_71_1631 | vegetarian > omnivore | 1.26045 | 0.00102 |
| B65_contig_71_1633 | vegetarian > omnivore | 1.25825 | 0.00102 |
| B65_contig_71_1633 | vegan > omnivore | 1.47920 | 0.00484 |
| B65_contig_71_1634 | vegetarian > vegan | 1.60637 | 0.00455 |
| B65_contig_71_1634 | vegetarian > omnivore | 1.59668 | 0.00102 |
| B65_contig_71_1635 | vegetarian > omnivore | 1.04668 | 0.00102 |