Cluster: B65.bin_10_CGC2
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: B65.bin_10
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_71 | B65_contig_71_228 | 242736 | 244049 | + | GH27 |
| CAZyme | B65_contig_71 | B65_contig_71_229 | 244059 | 245990 | - | GH127 |
| CAZyme | B65_contig_71 | B65_contig_71_230 | 246034 | 247836 | - | GH2 |
| CAZyme | B65_contig_71 | B65_contig_71_231 | 247814 | 248746 | - | GH43_22 |
| CAZyme | B65_contig_71 | B65_contig_71_232 | 248791 | 250536 | - | GH35 |
| pfam | B65_contig_71 | B65_contig_71_233 | 250669 | 252318 | - | DUF3502 |
| TC | B65_contig_71 | B65_contig_71_234 | 252423 | 253328 | - | 3.A.1.1.29 |
| TC | B65_contig_71 | B65_contig_71_235 | 253347 | 254468 | - | 3.A.1.1.10 |
| TF | B65_contig_71 | B65_contig_71_236 | 254669 | 255700 | - | LacI |
| pfam | B65_contig_71 | B65_contig_71_237 | 255782 | 257146 | - | MatE | MatE |
| CAZyme | B65_contig_71 | B65_contig_71_238 | 257127 | 259580 | - | GH2 |
| TF | B65_contig_71 | B65_contig_71_239 | 259695 | 260591 | - | HTH_AraC |
| CAZyme | B65_contig_71 | B65_contig_71_240 | 260629 | 261816 | - | GH88 |
| CAZyme | B65_contig_71 | B65_contig_71_241 | 261788 | 264151 | - | CBM67 | GH78 |
Gene ID: B65_contig_71_228
Type: CAZyme
Location: 242736 - 244049 (+)
Type: CAZyme
Location: 242736 - 244049 (+)
Gene ID: B65_contig_71_229
Type: CAZyme
Location: 244059 - 245990 (-)
Type: CAZyme
Location: 244059 - 245990 (-)
Gene ID: B65_contig_71_230
Type: CAZyme
Location: 246034 - 247836 (-)
Type: CAZyme
Location: 246034 - 247836 (-)
Gene ID: B65_contig_71_231
Type: CAZyme
Location: 247814 - 248746 (-)
Type: CAZyme
Location: 247814 - 248746 (-)
Gene ID: B65_contig_71_232
Type: CAZyme
Location: 248791 - 250536 (-)
Type: CAZyme
Location: 248791 - 250536 (-)
Gene ID: B65_contig_71_233
Type: pfam
Location: 250669 - 252318 (-)
Type: pfam
Location: 250669 - 252318 (-)
Gene ID: B65_contig_71_234
Type: TC
Location: 252423 - 253328 (-)
Type: TC
Location: 252423 - 253328 (-)
Gene ID: B65_contig_71_235
Type: TC
Location: 253347 - 254468 (-)
Type: TC
Location: 253347 - 254468 (-)
Gene ID: B65_contig_71_236
Type: TF
Location: 254669 - 255700 (-)
Type: TF
Location: 254669 - 255700 (-)
Gene ID: B65_contig_71_237
Type: pfam
Location: 255782 - 257146 (-)
Type: pfam
Location: 255782 - 257146 (-)
Gene ID: B65_contig_71_238
Type: CAZyme
Location: 257127 - 259580 (-)
Type: CAZyme
Location: 257127 - 259580 (-)
Gene ID: B65_contig_71_239
Type: TF
Location: 259695 - 260591 (-)
Type: TF
Location: 259695 - 260591 (-)
Gene ID: B65_contig_71_240
Type: CAZyme
Location: 260629 - 261816 (-)
Type: CAZyme
Location: 260629 - 261816 (-)
Gene ID: B65_contig_71_241
Type: CAZyme
Location: 261788 - 264151 (-)
Type: CAZyme
Location: 261788 - 264151 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_228 | vegan > omnivore | 1.24013 | 0.00484 |
| B65_contig_71_228 | vegetarian > omnivore | 1.46202 | 0.00102 |
| B65_contig_71_231 | vegetarian > omnivore | 1.39694 | 0.00102 |
| B65_contig_71_231 | vegetarian > vegan | 1.17021 | 0.00455 |
| B65_contig_71_234 | vegan > omnivore | 1.08693 | 0.00484 |
| B65_contig_71_234 | vegetarian > omnivore | 1.03175 | 0.00102 |
| B65_contig_71_236 | vegetarian > omnivore | 2.56349 | 0.00102 |
| B65_contig_71_236 | vegan > omnivore | 1.84758 | 0.00484 |
| B65_contig_71_237 | vegetarian > vegan | 1.01297 | 0.00455 |
| B65_contig_71_237 | vegetarian > omnivore | 1.88311 | 0.00102 |
| B65_contig_71_238 | vegetarian > omnivore | 1.87879 | 0.00102 |
| B65_contig_71_238 | vegan > omnivore | 1.33479 | 0.00484 |
| B65_contig_71_241 | vegan > omnivore | 1.25822 | 0.00484 |
| B65_contig_71_241 | vegetarian > omnivore | 1.88119 | 0.00102 |