Cluster: B65.bin_10_CGC18
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_04619
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_71 | B65_contig_71_1313 | 1404322 | 1405410 | - | GH3 |
| CAZyme | B65_contig_71 | B65_contig_71_1314 | 1405613 | 1409473 | - | GH43_35 | GH51_2 |
| CAZyme | B65_contig_71 | B65_contig_71_1315 | 1409511 | 1411472 | - | GH120 | GH120 |
| TC | B65_contig_71 | B65_contig_71_1316 | 1411584 | 1413008 | - | 2.A.66.1.10 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_1317 | 1413005 | 1413154 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B65_contig_71 | B65_contig_71_1318 | 1413097 | 1413873 | - | CE1 |
| peptidase | B65_contig_71 | B65_contig_71_1319 | 1413875 | 1414669 | - | S09.UPW |
| CAZyme | B65_contig_71 | B65_contig_71_1320 | 1414685 | 1416292 | - | GH51_1 |
| CAZyme | B65_contig_71 | B65_contig_71_1321 | 1416348 | 1418660 | - | CE1 | CE1 |
| TF | B65_contig_71 | B65_contig_71_1322 | 1418769 | 1419827 | - | LacI |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_1323 | 1420000 | 1421769 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B65_contig_71 | B65_contig_71_1324 | 1421838 | 1422758 | - | 3.A.1.1.29 |
| TC | B65_contig_71 | B65_contig_71_1325 | 1422779 | 1423699 | - | 3.A.1.1.10 |
| CAZyme | B65_contig_71 | B65_contig_71_1326 | 1423799 | 1425505 | - | CE1 |
| TC | B65_contig_71 | B65_contig_71_1327 | 1425809 | 1427263 | + | 2.A.66.1.12 |
Gene ID: B65_contig_71_1313
Type: CAZyme
Location: 1404322 - 1405410 (-)
Type: CAZyme
Location: 1404322 - 1405410 (-)
Gene ID: B65_contig_71_1314
Type: CAZyme
Location: 1405613 - 1409473 (-)
Type: CAZyme
Location: 1405613 - 1409473 (-)
Gene ID: B65_contig_71_1315
Type: CAZyme
Location: 1409511 - 1411472 (-)
Type: CAZyme
Location: 1409511 - 1411472 (-)
Gene ID: B65_contig_71_1316
Type: TC
Location: 1411584 - 1413008 (-)
Type: TC
Location: 1411584 - 1413008 (-)
Gene ID: B65_contig_71_1317
Type:
Location: 1413005 - 1413154 (-)
Type:
Location: 1413005 - 1413154 (-)
Gene ID: B65_contig_71_1318
Type: CAZyme
Location: 1413097 - 1413873 (-)
Type: CAZyme
Location: 1413097 - 1413873 (-)
Gene ID: B65_contig_71_1319
Type: peptidase
Location: 1413875 - 1414669 (-)
Type: peptidase
Location: 1413875 - 1414669 (-)
Gene ID: B65_contig_71_1320
Type: CAZyme
Location: 1414685 - 1416292 (-)
Type: CAZyme
Location: 1414685 - 1416292 (-)
Gene ID: B65_contig_71_1321
Type: CAZyme
Location: 1416348 - 1418660 (-)
Type: CAZyme
Location: 1416348 - 1418660 (-)
Gene ID: B65_contig_71_1322
Type: TF
Location: 1418769 - 1419827 (-)
Type: TF
Location: 1418769 - 1419827 (-)
Gene ID: B65_contig_71_1323
Type:
Location: 1420000 - 1421769 (-)
Type:
Location: 1420000 - 1421769 (-)
Gene ID: B65_contig_71_1324
Type: TC
Location: 1421838 - 1422758 (-)
Type: TC
Location: 1421838 - 1422758 (-)
Gene ID: B65_contig_71_1325
Type: TC
Location: 1422779 - 1423699 (-)
Type: TC
Location: 1422779 - 1423699 (-)
Gene ID: B65_contig_71_1326
Type: CAZyme
Location: 1423799 - 1425505 (-)
Type: CAZyme
Location: 1423799 - 1425505 (-)
Gene ID: B65_contig_71_1327
Type: TC
Location: 1425809 - 1427263 (+)
Type: TC
Location: 1425809 - 1427263 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_1313 | vegan > omnivore | 1.27675 | 0.00484 |
| B65_contig_71_1314 | vegan > omnivore | 1.49650 | 0.00484 |
| B65_contig_71_1314 | vegetarian > omnivore | 1.80999 | 0.00102 |
| B65_contig_71_1315 | vegan > omnivore | 2.37538 | 0.00484 |
| B65_contig_71_1315 | vegetarian > omnivore | 2.20313 | 0.00102 |
| B65_contig_71_1316 | vegan > omnivore | 1.95220 | 0.00484 |
| B65_contig_71_1316 | vegetarian > omnivore | 1.82216 | 0.00102 |
| B65_contig_71_1317 | vegan > omnivore | 3.35884 | 0.00484 |
| B65_contig_71_1317 | vegetarian > omnivore | 3.63367 | 0.00102 |
| B65_contig_71_1318 | vegan > omnivore | 1.13697 | 0.00484 |
| B65_contig_71_1318 | vegetarian > omnivore | 1.08162 | 0.00102 |
| B65_contig_71_1319 | vegetarian > omnivore | 1.68770 | 0.00102 |
| B65_contig_71_1319 | vegan > omnivore | 1.87279 | 0.00484 |
| B65_contig_71_1320 | vegetarian > omnivore | 3.10997 | 0.00102 |
| B65_contig_71_1320 | vegan > omnivore | 3.61197 | 0.00148 |
| B65_contig_71_1321 | vegetarian > omnivore | 1.14895 | 0.00102 |
| B65_contig_71_1321 | vegan > omnivore | 1.29146 | 0.00484 |
| B65_contig_71_1322 | vegetarian > omnivore | 1.46761 | 0.00102 |
| B65_contig_71_1322 | vegan > omnivore | 2.04806 | 0.00484 |
| B65_contig_71_1323 | vegan > omnivore | 1.27297 | 0.00484 |
| B65_contig_71_1324 | vegan > omnivore | 2.29528 | 0.00484 |
| B65_contig_71_1324 | vegetarian > omnivore | 1.94514 | 0.00102 |
| B65_contig_71_1325 | vegan > omnivore | 1.75796 | 0.00484 |
| B65_contig_71_1325 | vegetarian > omnivore | 1.42759 | 0.00102 |
| B65_contig_71_1326 | vegetarian > omnivore | 3.20949 | 0.00102 |
| B65_contig_71_1326 | vegan > omnivore | 3.26812 | 0.00484 |
| B65_contig_71_1327 | vegetarian > omnivore | 1.04033 | 0.00102 |