Cluster: B65.bin_10_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_02945
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_71 | B65_contig_71_1227 | 1314005 | 1315687 | - | GH13_31 |
| TF | B65_contig_71 | B65_contig_71_1228 | 1315769 | 1316746 | - | LacI |
| CAZyme | B65_contig_71 | B65_contig_71_1229 | 1316734 | 1318425 | - | GH32 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_1230 | 1318496 | 1318969 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B65_contig_71 | B65_contig_71_1231 | 1319320 | 1323438 | - | CBM22 | CBM86 | CBM9 | GH10 |
| TC | B65_contig_71 | B65_contig_71_1232 | 1323673 | 1324251 | - | 1.C.39.4.6 |
| pfam | B65_contig_71 | B65_contig_71_1233 | 1324460 | 1324723 | - | Ribosomal_S18 |
| TC | B65_contig_71 | B65_contig_71_1234 | 1324782 | 1325228 | - | 3.A.7.19.1 |
Gene ID: B65_contig_71_1227
Type: CAZyme
Location: 1314005 - 1315687 (-)
Type: CAZyme
Location: 1314005 - 1315687 (-)
Gene ID: B65_contig_71_1228
Type: TF
Location: 1315769 - 1316746 (-)
Type: TF
Location: 1315769 - 1316746 (-)
Gene ID: B65_contig_71_1229
Type: CAZyme
Location: 1316734 - 1318425 (-)
Type: CAZyme
Location: 1316734 - 1318425 (-)
Gene ID: B65_contig_71_1230
Type:
Location: 1318496 - 1318969 (-)
Type:
Location: 1318496 - 1318969 (-)
Gene ID: B65_contig_71_1231
Type: CAZyme
Location: 1319320 - 1323438 (-)
Type: CAZyme
Location: 1319320 - 1323438 (-)
Gene ID: B65_contig_71_1232
Type: TC
Location: 1323673 - 1324251 (-)
Type: TC
Location: 1323673 - 1324251 (-)
Gene ID: B65_contig_71_1233
Type: pfam
Location: 1324460 - 1324723 (-)
Type: pfam
Location: 1324460 - 1324723 (-)
Gene ID: B65_contig_71_1234
Type: TC
Location: 1324782 - 1325228 (-)
Type: TC
Location: 1324782 - 1325228 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_1228 | vegetarian > omnivore | 1.49422 | 0.00102 |
| B65_contig_71_1228 | vegetarian > vegan | 1.06382 | 0.00455 |
| B65_contig_71_1230 | vegetarian > omnivore | 1.13808 | 0.00102 |
| B65_contig_71_1232 | vegan > omnivore | 1.00253 | 0.00484 |
| B65_contig_71_1232 | vegetarian > omnivore | 1.82035 | 0.00102 |