Cluster: B65.bin_10_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_07536
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B65_contig_71 | B65_contig_71_853 | 914853 | 916970 | - | 1.B.52.2.2 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_854 | 917782 | 918558 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | B65_contig_71 | B65_contig_71_855 | 918989 | 919720 | + | S1_2 |
| CAZyme | B65_contig_71 | B65_contig_71_856 | 919745 | 921859 | - | GH13_11 |
| pfam | B65_contig_71 | B65_contig_71_857 | 921856 | 922584 | - | Aldolase_II |
| CAZyme | B65_contig_71 | B65_contig_71_858 | 922716 | 923822 | + | CE8 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_859 | 923927 | 924079 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | B65_contig_71 | B65_contig_71_860 | 924259 | 925320 | - | G05.UPW |
| CAZyme | B65_contig_71 | B65_contig_71_861 | 925363 | 926214 | - | GH166 |
| TC | B65_contig_71 | B65_contig_71_862 | 926207 | 927172 | - | 2.A.7.3.52 |
Gene ID: B65_contig_71_853
Type: TC
Location: 914853 - 916970 (-)
Type: TC
Location: 914853 - 916970 (-)
Gene ID: B65_contig_71_854
Type:
Location: 917782 - 918558 (-)
Type:
Location: 917782 - 918558 (-)
Gene ID: B65_contig_71_855
Type: sulfatase
Location: 918989 - 919720 (+)
Type: sulfatase
Location: 918989 - 919720 (+)
Gene ID: B65_contig_71_856
Type: CAZyme
Location: 919745 - 921859 (-)
Type: CAZyme
Location: 919745 - 921859 (-)
Gene ID: B65_contig_71_857
Type: pfam
Location: 921856 - 922584 (-)
Type: pfam
Location: 921856 - 922584 (-)
Gene ID: B65_contig_71_858
Type: CAZyme
Location: 922716 - 923822 (+)
Type: CAZyme
Location: 922716 - 923822 (+)
Gene ID: B65_contig_71_859
Type:
Location: 923927 - 924079 (+)
Type:
Location: 923927 - 924079 (+)
Gene ID: B65_contig_71_860
Type: peptidase
Location: 924259 - 925320 (-)
Type: peptidase
Location: 924259 - 925320 (-)
Gene ID: B65_contig_71_861
Type: CAZyme
Location: 925363 - 926214 (-)
Type: CAZyme
Location: 925363 - 926214 (-)
Gene ID: B65_contig_71_862
Type: TC
Location: 926207 - 927172 (-)
Type: TC
Location: 926207 - 927172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_853 | vegetarian > omnivore | 1.04821 | 0.00102 |
| B65_contig_71_858 | vegetarian > omnivore | 1.57071 | 0.00102 |
| B65_contig_71_859 | vegan > omnivore | 1.62767 | 0.00484 |
| B65_contig_71_859 | vegetarian > omnivore | 1.16736 | 0.00102 |
| B65_contig_71_861 | vegan > omnivore | 1.06610 | 0.00484 |
| B65_contig_71_861 | vegetarian > omnivore | 1.79598 | 0.00102 |
| B65_contig_71_862 | vegetarian > omnivore | 2.19101 | 0.00102 |
| B65_contig_71_862 | vegan > omnivore | 1.83435 | 0.00484 |