Cluster: B65.bin_10_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: B65.bin_10
- CGC Family ID: CGCFAM_04853
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B65_contig_71 | B65_contig_71_561 | 640265 | 642508 | - | GH31_1 |
| NULL(UNKNOWN) | B65_contig_71 | B65_contig_71_562 | 642529 | 642762 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B65_contig_71 | B65_contig_71_563 | 642974 | 644008 | - | NMT1 | NMT1_2 |
| TC | B65_contig_71 | B65_contig_71_564 | 644104 | 644961 | - | 3.A.1.17.3 |
| TC | B65_contig_71 | B65_contig_71_565 | 644942 | 645832 | - | 3.A.1.17.8 |
| TC | B65_contig_71 | B65_contig_71_566 | 645991 | 646866 | - | 1.A.35.3.2 |
| TC | B65_contig_71 | B65_contig_71_567 | 646870 | 647472 | - | 2.A.115.2.14 |
| pfam | B65_contig_71 | B65_contig_71_568 | 647549 | 650662 | - | FtsX | FtsX | MacB_PCD |
| TC | B65_contig_71 | B65_contig_71_569 | 650669 | 651373 | - | 3.A.1.122.7 |
Gene ID: B65_contig_71_561
Type: CAZyme
Location: 640265 - 642508 (-)
Type: CAZyme
Location: 640265 - 642508 (-)
Gene ID: B65_contig_71_562
Type:
Location: 642529 - 642762 (-)
Type:
Location: 642529 - 642762 (-)
Gene ID: B65_contig_71_563
Type: pfam
Location: 642974 - 644008 (-)
Type: pfam
Location: 642974 - 644008 (-)
Gene ID: B65_contig_71_564
Type: TC
Location: 644104 - 644961 (-)
Type: TC
Location: 644104 - 644961 (-)
Gene ID: B65_contig_71_565
Type: TC
Location: 644942 - 645832 (-)
Type: TC
Location: 644942 - 645832 (-)
Gene ID: B65_contig_71_566
Type: TC
Location: 645991 - 646866 (-)
Type: TC
Location: 645991 - 646866 (-)
Gene ID: B65_contig_71_567
Type: TC
Location: 646870 - 647472 (-)
Type: TC
Location: 646870 - 647472 (-)
Gene ID: B65_contig_71_568
Type: pfam
Location: 647549 - 650662 (-)
Type: pfam
Location: 647549 - 650662 (-)
Gene ID: B65_contig_71_569
Type: TC
Location: 650669 - 651373 (-)
Type: TC
Location: 650669 - 651373 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B65_contig_71_562 | vegetarian > vegan | 1.49209 | 0.00455 |
| B65_contig_71_563 | vegetarian > omnivore | 1.04462 | 0.00102 |
| B65_contig_71_563 | vegetarian > vegan | 1.03480 | 0.00455 |
| B65_contig_71_566 | vegetarian > omnivore | 1.35527 | 0.00102 |
| B65_contig_71_567 | vegan > omnivore | 1.40029 | 0.00484 |
| B65_contig_71_567 | vegetarian > omnivore | 1.75159 | 0.00102 |
| B65_contig_71_568 | vegetarian > omnivore | 1.33098 | 0.00102 |