Cluster: B50.CMAG_3_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: B50.CMAG_3
- CGC Family ID: CGCFAM_00126
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B50_contig_4164 | B50_contig_4164_29 | 36253 | 40800 | - | 3.A.7.17.1 |
| pfam | B50_contig_4164 | B50_contig_4164_30 | 41407 | 42594 | + | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | B50_contig_4164 | B50_contig_4164_31 | 42597 | 44603 | + | GT2 |
| pfam | B50_contig_4164 | B50_contig_4164_32 | 44600 | 45481 | + | ABC2_membrane |
| TC | B50_contig_4164 | B50_contig_4164_33 | 45486 | 46259 | + | 3.A.1.103.5 |
| TC | B50_contig_4164 | B50_contig_4164_34 | 46766 | 48028 | + | 9.A.47.2.1 |
Gene ID: B50_contig_4164_29
Type: TC
Location: 36253 - 40800 (-)
Type: TC
Location: 36253 - 40800 (-)
Gene ID: B50_contig_4164_30
Type: pfam
Location: 41407 - 42594 (+)
Type: pfam
Location: 41407 - 42594 (+)
Gene ID: B50_contig_4164_31
Type: CAZyme
Location: 42597 - 44603 (+)
Type: CAZyme
Location: 42597 - 44603 (+)
Gene ID: B50_contig_4164_32
Type: pfam
Location: 44600 - 45481 (+)
Type: pfam
Location: 44600 - 45481 (+)
Gene ID: B50_contig_4164_33
Type: TC
Location: 45486 - 46259 (+)
Type: TC
Location: 45486 - 46259 (+)
Gene ID: B50_contig_4164_34
Type: TC
Location: 46766 - 48028 (+)
Type: TC
Location: 46766 - 48028 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp001808955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.