Cluster: B50.CMAG_3_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: B50.CMAG_3
- CGC Family ID: CGCFAM_02619
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B50_contig_4164 | B50_contig_4164_1000 | 1365891 | 1367711 | + | GH13_29 |
| pfam | B50_contig_4164 | B50_contig_4164_1001 | 1367857 | 1368846 | - | OpuAC |
| TC | B50_contig_4164 | B50_contig_4164_1002 | 1368843 | 1369541 | - | 3.A.1.12.4 |
| TC | B50_contig_4164 | B50_contig_4164_1003 | 1369545 | 1370309 | - | 3.A.1.12.10 |
| TC | B50_contig_4164 | B50_contig_4164_1004 | 1370306 | 1371238 | - | 3.A.1.12.14 |
Gene ID: B50_contig_4164_1000
Type: CAZyme
Location: 1365891 - 1367711 (+)
Type: CAZyme
Location: 1365891 - 1367711 (+)
Gene ID: B50_contig_4164_1001
Type: pfam
Location: 1367857 - 1368846 (-)
Type: pfam
Location: 1367857 - 1368846 (-)
Gene ID: B50_contig_4164_1002
Type: TC
Location: 1368843 - 1369541 (-)
Type: TC
Location: 1368843 - 1369541 (-)
Gene ID: B50_contig_4164_1003
Type: TC
Location: 1369545 - 1370309 (-)
Type: TC
Location: 1369545 - 1370309 (-)
Gene ID: B50_contig_4164_1004
Type: TC
Location: 1370306 - 1371238 (-)
Type: TC
Location: 1370306 - 1371238 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp001808955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.