Cluster: B41.bin_1_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: B41.bin_1
- CGC Family ID: CGCFAM_01404
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B41_contig_445 | B41_contig_445_88 | 101385 | 103985 | + | GH3 |
| pfam | B41_contig_445 | B41_contig_445_89 | 104104 | 105078 | - | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | B41_contig_445 | B41_contig_445_90 | 105162 | 107180 | - | GH13_8 |
| TC | B41_contig_445 | B41_contig_445_91 | 107266 | 109581 | - | 2.A.37.4.2 |
| CAZyme | B41_contig_445 | B41_contig_445_92 | 109764 | 111881 | - | GH2 |
| TF | B41_contig_445 | B41_contig_445_93 | 112039 | 116073 | + | HTH_AraC |
| TC | B41_contig_445 | B41_contig_445_94 | 116255 | 119338 | + | 1.B.14.6.1 |
| TC | B41_contig_445 | B41_contig_445_95 | 119364 | 120962 | + | 8.A.46.1.6 |
| NULL(UNKNOWN) | B41_contig_445 | B41_contig_445_96 | 121000 | 121098 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B41_contig_445 | B41_contig_445_97 | 121156 | 122325 | + | GH105 |
| TC | B41_contig_445 | B41_contig_445_98 | 122651 | 125989 | + | 9.A.25.1.1 |
| pfam | B41_contig_445 | B41_contig_445_99 | 126042 | 129002 | - | AAA_23 | SbcC_Walker_B |
| pfam | B41_contig_445 | B41_contig_445_100 | 128999 | 130243 | - | Metallophos | SbcD_C |
| TC | B41_contig_445 | B41_contig_445_101 | 130415 | 132085 | + | 2.A.81.1.2 |
Gene ID: B41_contig_445_88
Type: CAZyme
Location: 101385 - 103985 (+)
Type: CAZyme
Location: 101385 - 103985 (+)
Gene ID: B41_contig_445_89
Type: pfam
Location: 104104 - 105078 (-)
Type: pfam
Location: 104104 - 105078 (-)
Gene ID: B41_contig_445_90
Type: CAZyme
Location: 105162 - 107180 (-)
Type: CAZyme
Location: 105162 - 107180 (-)
Gene ID: B41_contig_445_91
Type: TC
Location: 107266 - 109581 (-)
Type: TC
Location: 107266 - 109581 (-)
Gene ID: B41_contig_445_92
Type: CAZyme
Location: 109764 - 111881 (-)
Type: CAZyme
Location: 109764 - 111881 (-)
Gene ID: B41_contig_445_93
Type: TF
Location: 112039 - 116073 (+)
Type: TF
Location: 112039 - 116073 (+)
Gene ID: B41_contig_445_94
Type: TC
Location: 116255 - 119338 (+)
Type: TC
Location: 116255 - 119338 (+)
Gene ID: B41_contig_445_95
Type: TC
Location: 119364 - 120962 (+)
Type: TC
Location: 119364 - 120962 (+)
Gene ID: B41_contig_445_96
Type:
Location: 121000 - 121098 (+)
Type:
Location: 121000 - 121098 (+)
Gene ID: B41_contig_445_97
Type: CAZyme
Location: 121156 - 122325 (+)
Type: CAZyme
Location: 121156 - 122325 (+)
Gene ID: B41_contig_445_98
Type: TC
Location: 122651 - 125989 (+)
Type: TC
Location: 122651 - 125989 (+)
Gene ID: B41_contig_445_99
Type: pfam
Location: 126042 - 129002 (-)
Type: pfam
Location: 126042 - 129002 (-)
Gene ID: B41_contig_445_100
Type: pfam
Location: 128999 - 130243 (-)
Type: pfam
Location: 128999 - 130243 (-)
Gene ID: B41_contig_445_101
Type: TC
Location: 130415 - 132085 (+)
Type: TC
Location: 130415 - 132085 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.