Cluster: B41.bin_1_CGC43
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: B41.bin_1
- CGC Family ID: CGCFAM_07495
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B41_contig_445 | B41_contig_445_1495 | 1918636 | 1921938 | + | 1.B.14.6.1 |
| TC | B41_contig_445 | B41_contig_445_1496 | 1921958 | 1923565 | + | 8.A.46.1.6 |
| NULL(UNKNOWN) | B41_contig_445 | B41_contig_445_1497 | 1923559 | 1925316 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B41_contig_445 | B41_contig_445_1498 | 1925326 | 1926444 | + | GH105 |
| STP | B41_contig_445 | B41_contig_445_1499 | 1926544 | 1927776 | + | EPSP_synthase |
| NULL(UNKNOWN) | B41_contig_445 | B41_contig_445_1500 | 1927846 | 1928268 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B41_contig_445 | B41_contig_445_1501 | 1928402 | 1929205 | + | 3.A.1.15.6 |
Gene ID: B41_contig_445_1495
Type: TC
Location: 1918636 - 1921938 (+)
Type: TC
Location: 1918636 - 1921938 (+)
Gene ID: B41_contig_445_1496
Type: TC
Location: 1921958 - 1923565 (+)
Type: TC
Location: 1921958 - 1923565 (+)
Gene ID: B41_contig_445_1497
Type:
Location: 1923559 - 1925316 (+)
Type:
Location: 1923559 - 1925316 (+)
Gene ID: B41_contig_445_1498
Type: CAZyme
Location: 1925326 - 1926444 (+)
Type: CAZyme
Location: 1925326 - 1926444 (+)
Gene ID: B41_contig_445_1499
Type: STP
Location: 1926544 - 1927776 (+)
Type: STP
Location: 1926544 - 1927776 (+)
Gene ID: B41_contig_445_1500
Type:
Location: 1927846 - 1928268 (+)
Type:
Location: 1927846 - 1928268 (+)
Gene ID: B41_contig_445_1501
Type: TC
Location: 1928402 - 1929205 (+)
Type: TC
Location: 1928402 - 1929205 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B41_contig_445_1497 | vegetarian > omnivore | 1.03452 | 0.00560 |
| B41_contig_445_1498 | vegan > omnivore | 1.47122 | 0.04047 |