Cluster: B41.bin_1_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: B41.bin_1
- CGC Family ID: CGCFAM_01021
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B41_contig_445 | B41_contig_445_396 | 474888 | 476048 | - | CE9 |
| CAZyme | B41_contig_445 | B41_contig_445_397 | 476052 | 477218 | - | CE9 |
| TC | B41_contig_445 | B41_contig_445_398 | 477651 | 479597 | - | 3.A.1.121.4 |
| sulfatase | B41_contig_445 | B41_contig_445_399 | 479674 | 481059 | - | S1_19 |
| CAZyme | B41_contig_445 | B41_contig_445_400 | 481083 | 482150 | - | GH159 |
| CAZyme | B41_contig_445 | B41_contig_445_401 | 482162 | 485074 | - | GH2 |
| pfam | B41_contig_445 | B41_contig_445_402 | 485168 | 486790 | - | SusD_RagB | SusD-like_3 |
| TC | B41_contig_445 | B41_contig_445_403 | 486830 | 489949 | - | 1.B.14.6.1 |
| TC | B41_contig_445 | B41_contig_445_404 | 491024 | 494128 | + | 1.B.14.6.1 |
| pfam | B41_contig_445 | B41_contig_445_405 | 494140 | 495921 | + | SusD_RagB | SusD-like_3 |
| pfam | B41_contig_445 | B41_contig_445_406 | 496128 | 496682 | + | DUF3332 |
| CAZyme | B41_contig_445 | B41_contig_445_407 | 496783 | 500160 | + | GH2 |
Gene ID: B41_contig_445_396
Type: CAZyme
Location: 474888 - 476048 (-)
Type: CAZyme
Location: 474888 - 476048 (-)
Gene ID: B41_contig_445_397
Type: CAZyme
Location: 476052 - 477218 (-)
Type: CAZyme
Location: 476052 - 477218 (-)
Gene ID: B41_contig_445_398
Type: TC
Location: 477651 - 479597 (-)
Type: TC
Location: 477651 - 479597 (-)
Gene ID: B41_contig_445_399
Type: sulfatase
Location: 479674 - 481059 (-)
Type: sulfatase
Location: 479674 - 481059 (-)
Gene ID: B41_contig_445_400
Type: CAZyme
Location: 481083 - 482150 (-)
Type: CAZyme
Location: 481083 - 482150 (-)
Gene ID: B41_contig_445_401
Type: CAZyme
Location: 482162 - 485074 (-)
Type: CAZyme
Location: 482162 - 485074 (-)
Gene ID: B41_contig_445_402
Type: pfam
Location: 485168 - 486790 (-)
Type: pfam
Location: 485168 - 486790 (-)
Gene ID: B41_contig_445_403
Type: TC
Location: 486830 - 489949 (-)
Type: TC
Location: 486830 - 489949 (-)
Gene ID: B41_contig_445_404
Type: TC
Location: 491024 - 494128 (+)
Type: TC
Location: 491024 - 494128 (+)
Gene ID: B41_contig_445_405
Type: pfam
Location: 494140 - 495921 (+)
Type: pfam
Location: 494140 - 495921 (+)
Gene ID: B41_contig_445_406
Type: pfam
Location: 496128 - 496682 (+)
Type: pfam
Location: 496128 - 496682 (+)
Gene ID: B41_contig_445_407
Type: CAZyme
Location: 496783 - 500160 (+)
Type: CAZyme
Location: 496783 - 500160 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.