Cluster: B41.bin_1_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: B41.bin_1
- CGC Family ID: CGCFAM_00007
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B41_contig_445 | B41_contig_445_297 | 360148 | 361284 | + | 9.B.146.1.4 |
| pfam | B41_contig_445 | B41_contig_445_298 | 361299 | 362507 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| NULL(UNKNOWN) | B41_contig_445 | B41_contig_445_299 | 362518 | 364047 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B41_contig_445 | B41_contig_445_300 | 364050 | 365024 | + | GT4 |
| NULL(UNKNOWN) | B41_contig_445 | B41_contig_445_301 | 365002 | 366291 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B41_contig_445 | B41_contig_445_302 | 366278 | 367327 | + | GT4 |
| pfam | B41_contig_445 | B41_contig_445_303 | 367387 | 368292 | + | ATPgrasp_TupA |
| pfam | B41_contig_445 | B41_contig_445_304 | 368289 | 368717 | + | Hexapep | Hexapep_2 |
| CAZyme | B41_contig_445 | B41_contig_445_305 | 368714 | 369421 | + | GT26 |
Gene ID: B41_contig_445_297
Type: TC
Location: 360148 - 361284 (+)
Type: TC
Location: 360148 - 361284 (+)
Gene ID: B41_contig_445_298
Type: pfam
Location: 361299 - 362507 (+)
Type: pfam
Location: 361299 - 362507 (+)
Gene ID: B41_contig_445_299
Type:
Location: 362518 - 364047 (+)
Type:
Location: 362518 - 364047 (+)
Gene ID: B41_contig_445_300
Type: CAZyme
Location: 364050 - 365024 (+)
Type: CAZyme
Location: 364050 - 365024 (+)
Gene ID: B41_contig_445_301
Type:
Location: 365002 - 366291 (+)
Type:
Location: 365002 - 366291 (+)
Gene ID: B41_contig_445_302
Type: CAZyme
Location: 366278 - 367327 (+)
Type: CAZyme
Location: 366278 - 367327 (+)
Gene ID: B41_contig_445_303
Type: pfam
Location: 367387 - 368292 (+)
Type: pfam
Location: 367387 - 368292 (+)
Gene ID: B41_contig_445_304
Type: pfam
Location: 368289 - 368717 (+)
Type: pfam
Location: 368289 - 368717 (+)
Gene ID: B41_contig_445_305
Type: CAZyme
Location: 368714 - 369421 (+)
Type: CAZyme
Location: 368714 - 369421 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B41_contig_445_300 | vegetarian > omnivore | 1.34772 | 0.00560 |
| B41_contig_445_304 | vegetarian > omnivore | 1.18879 | 0.00560 |
| B41_contig_445_305 | vegetarian > omnivore | 1.26408 | 0.00560 |