Cluster: B36.bin_9_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: B36.bin_9
- CGC Family ID: CGCFAM_01402
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B36_contig_110 | B36_contig_110_1442 | 1619267 | 1620646 | + | 2.A.103.1.1 |
| pfam | B36_contig_110 | B36_contig_110_1443 | 1620594 | 1622087 | + | Transpeptidase | PBP_dimer_2 |
| STP | B36_contig_110 | B36_contig_110_1444 | 1622236 | 1622670 | + | NUDIX |
| CAZyme | B36_contig_110 | B36_contig_110_1445 | 1622674 | 1623618 | + | GH23 |
Gene ID: B36_contig_110_1442
Type: TC
Location: 1619267 - 1620646 (+)
Type: TC
Location: 1619267 - 1620646 (+)
Gene ID: B36_contig_110_1443
Type: pfam
Location: 1620594 - 1622087 (+)
Type: pfam
Location: 1620594 - 1622087 (+)
Gene ID: B36_contig_110_1444
Type: STP
Location: 1622236 - 1622670 (+)
Type: STP
Location: 1622236 - 1622670 (+)
Gene ID: B36_contig_110_1445
Type: CAZyme
Location: 1622674 - 1623618 (+)
Type: CAZyme
Location: 1622674 - 1623618 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira pectinoschiza_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B36_contig_110_1442 | vegetarian > omnivore | 1.11265 | 0.01253 |
| B36_contig_110_1443 | vegetarian > omnivore | 1.06629 | 0.01253 |
| B36_contig_110_1443 | vegetarian > vegan | 1.23711 | 0.00110 |
| B36_contig_110_1444 | vegetarian > vegan | 2.43158 | 0.00110 |
| B36_contig_110_1445 | vegetarian > vegan | 1.82823 | 0.00110 |