Cluster: B36.bin_9_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: B36.bin_9
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B36_contig_110 | B36_contig_110_491 | 569228 | 569950 | + | 9.B.18.1.3 |
| CAZyme | B36_contig_110 | B36_contig_110_492 | 569954 | 571030 | + | GT2 |
| TC | B36_contig_110 | B36_contig_110_493 | 571033 | 572916 | + | 9.B.18.2.1 |
| CAZyme | B36_contig_110 | B36_contig_110_494 | 572939 | 574027 | + | GT4 |
| CAZyme | B36_contig_110 | B36_contig_110_495 | 574039 | 575124 | + | GT4 |
| pfam | B36_contig_110 | B36_contig_110_496 | 575220 | 576158 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | B36_contig_110 | B36_contig_110_497 | 576250 | 577443 | + | GT76 |
| NULL(UNKNOWN) | B36_contig_110 | B36_contig_110_498 | 577459 | 578355 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B36_contig_110 | B36_contig_110_499 | 578895 | 579635 | + | GT2 |
| NULL(UNKNOWN) | B36_contig_110 | B36_contig_110_500 | 579713 | 579859 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B36_contig_110 | B36_contig_110_501 | 579971 | 580447 | + | 9.A.24.1.7 |
| NULL(UNKNOWN) | B36_contig_110 | B36_contig_110_502 | 580704 | 581822 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B36_contig_110 | B36_contig_110_503 | 581867 | 583438 | + | 2.A.50.2.1 |
Gene ID: B36_contig_110_491
Type: TC
Location: 569228 - 569950 (+)
Type: TC
Location: 569228 - 569950 (+)
Gene ID: B36_contig_110_492
Type: CAZyme
Location: 569954 - 571030 (+)
Type: CAZyme
Location: 569954 - 571030 (+)
Gene ID: B36_contig_110_493
Type: TC
Location: 571033 - 572916 (+)
Type: TC
Location: 571033 - 572916 (+)
Gene ID: B36_contig_110_494
Type: CAZyme
Location: 572939 - 574027 (+)
Type: CAZyme
Location: 572939 - 574027 (+)
Gene ID: B36_contig_110_495
Type: CAZyme
Location: 574039 - 575124 (+)
Type: CAZyme
Location: 574039 - 575124 (+)
Gene ID: B36_contig_110_496
Type: pfam
Location: 575220 - 576158 (+)
Type: pfam
Location: 575220 - 576158 (+)
Gene ID: B36_contig_110_497
Type: CAZyme
Location: 576250 - 577443 (+)
Type: CAZyme
Location: 576250 - 577443 (+)
Gene ID: B36_contig_110_498
Type:
Location: 577459 - 578355 (+)
Type:
Location: 577459 - 578355 (+)
Gene ID: B36_contig_110_499
Type: CAZyme
Location: 578895 - 579635 (+)
Type: CAZyme
Location: 578895 - 579635 (+)
Gene ID: B36_contig_110_500
Type:
Location: 579713 - 579859 (+)
Type:
Location: 579713 - 579859 (+)
Gene ID: B36_contig_110_501
Type: TC
Location: 579971 - 580447 (+)
Type: TC
Location: 579971 - 580447 (+)
Gene ID: B36_contig_110_502
Type:
Location: 580704 - 581822 (+)
Type:
Location: 580704 - 581822 (+)
Gene ID: B36_contig_110_503
Type: TC
Location: 581867 - 583438 (+)
Type: TC
Location: 581867 - 583438 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira pectinoschiza_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B36_contig_110_494 | vegetarian > vegan | 1.88674 | 0.00110 |
| B36_contig_110_495 | vegetarian > vegan | 1.04201 | 0.00110 |
| B36_contig_110_497 | vegetarian > vegan | 1.37534 | 0.00110 |
| B36_contig_110_498 | vegetarian > vegan | 1.68049 | 0.00110 |
| B36_contig_110_499 | vegetarian > vegan | 1.37517 | 0.00110 |
| B36_contig_110_500 | vegetarian > vegan | 1.32396 | 0.00110 |
| B36_contig_110_501 | vegetarian > vegan | 1.17136 | 0.00110 |
| B36_contig_110_502 | vegetarian > vegan | 1.60078 | 0.00110 |
| B36_contig_110_503 | vegetarian > vegan | 1.39964 | 0.00110 |