Cluster: B127.bin_4_CGC60
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: B127.bin_4
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B127_contig_6880 | B127_contig_6880_39 | 35142 | 37010 | - | GH39 |
| pfam | B127_contig_6880 | B127_contig_6880_40 | 37136 | 39601 | - | Kelch_HCF |
| TC | B127_contig_6880 | B127_contig_6880_41 | 39945 | 42785 | + | 1.B.14.6.1 |
| pfam | B127_contig_6880 | B127_contig_6880_42 | 42844 | 44538 | + | SusD_RagB | SusD-like_3 |
| TC | B127_contig_6880 | B127_contig_6880_43 | 44565 | 47618 | + | 1.B.14.6.1 |
Gene ID: B127_contig_6880_39
Type: CAZyme
Location: 35142 - 37010 (-)
Type: CAZyme
Location: 35142 - 37010 (-)
Gene ID: B127_contig_6880_40
Type: pfam
Location: 37136 - 39601 (-)
Type: pfam
Location: 37136 - 39601 (-)
Gene ID: B127_contig_6880_41
Type: TC
Location: 39945 - 42785 (+)
Type: TC
Location: 39945 - 42785 (+)
Gene ID: B127_contig_6880_42
Type: pfam
Location: 42844 - 44538 (+)
Type: pfam
Location: 42844 - 44538 (+)
Gene ID: B127_contig_6880_43
Type: TC
Location: 44565 - 47618 (+)
Type: TC
Location: 44565 - 47618 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.