Cluster: B127.bin_4_CGC56
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: B127.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B127_contig_2058 | B127_contig_2058_241 | 307834 | 309144 | - | 2.A.35.1.5 |
| pfam | B127_contig_2058 | B127_contig_2058_242 | 309664 | 311139 | - | DUF4270 |
| CAZyme | B127_contig_2058 | B127_contig_2058_243 | 311155 | 311979 | - | GT5 |
| pfam | B127_contig_2058 | B127_contig_2058_244 | 312351 | 313196 | + | Pantoate_ligase |
| pfam | B127_contig_2058 | B127_contig_2058_245 | 313228 | 313578 | + | Asp_decarbox |
| TC | B127_contig_2058 | B127_contig_2058_246 | 313809 | 315131 | + | 2.A.66.1.28 |
| pfam | B127_contig_2058 | B127_contig_2058_247 | 315220 | 315819 | + | UPF0029 |
| pfam | B127_contig_2058 | B127_contig_2058_248 | 315865 | 319215 | - | DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter |
| CAZyme | B127_contig_2058 | B127_contig_2058_249 | 319528 | 320310 | + | GT2 |
| peptidase | B127_contig_2058 | B127_contig_2058_250 | 320291 | 321637 | + | M38.UNW |
| TC | B127_contig_2058 | B127_contig_2058_251 | 321634 | 322008 | + | 1.A.43.1.6 |
| pfam | B127_contig_2058 | B127_contig_2058_252 | 322019 | 323317 | + | RmuC |
| pfam | B127_contig_2058 | B127_contig_2058_253 | 323326 | 324348 | + | MR_MLE_N | MR_MLE_C |
| TC | B127_contig_2058 | B127_contig_2058_254 | 324360 | 326627 | - | 2.A.37.4.2 |
| CAZyme | B127_contig_2058 | B127_contig_2058_255 | 326839 | 328686 | - | GH13_46 |
| CAZyme | B127_contig_2058 | B127_contig_2058_256 | 328702 | 331452 | - | CBM35 |
Gene ID: B127_contig_2058_241
Type: TC
Location: 307834 - 309144 (-)
Type: TC
Location: 307834 - 309144 (-)
Gene ID: B127_contig_2058_242
Type: pfam
Location: 309664 - 311139 (-)
Type: pfam
Location: 309664 - 311139 (-)
Gene ID: B127_contig_2058_243
Type: CAZyme
Location: 311155 - 311979 (-)
Type: CAZyme
Location: 311155 - 311979 (-)
Gene ID: B127_contig_2058_244
Type: pfam
Location: 312351 - 313196 (+)
Type: pfam
Location: 312351 - 313196 (+)
Gene ID: B127_contig_2058_245
Type: pfam
Location: 313228 - 313578 (+)
Type: pfam
Location: 313228 - 313578 (+)
Gene ID: B127_contig_2058_246
Type: TC
Location: 313809 - 315131 (+)
Type: TC
Location: 313809 - 315131 (+)
Gene ID: B127_contig_2058_247
Type: pfam
Location: 315220 - 315819 (+)
Type: pfam
Location: 315220 - 315819 (+)
Gene ID: B127_contig_2058_248
Type: pfam
Location: 315865 - 319215 (-)
Type: pfam
Location: 315865 - 319215 (-)
Gene ID: B127_contig_2058_249
Type: CAZyme
Location: 319528 - 320310 (+)
Type: CAZyme
Location: 319528 - 320310 (+)
Gene ID: B127_contig_2058_250
Type: peptidase
Location: 320291 - 321637 (+)
Type: peptidase
Location: 320291 - 321637 (+)
Gene ID: B127_contig_2058_251
Type: TC
Location: 321634 - 322008 (+)
Type: TC
Location: 321634 - 322008 (+)
Gene ID: B127_contig_2058_252
Type: pfam
Location: 322019 - 323317 (+)
Type: pfam
Location: 322019 - 323317 (+)
Gene ID: B127_contig_2058_253
Type: pfam
Location: 323326 - 324348 (+)
Type: pfam
Location: 323326 - 324348 (+)
Gene ID: B127_contig_2058_254
Type: TC
Location: 324360 - 326627 (-)
Type: TC
Location: 324360 - 326627 (-)
Gene ID: B127_contig_2058_255
Type: CAZyme
Location: 326839 - 328686 (-)
Type: CAZyme
Location: 326839 - 328686 (-)
Gene ID: B127_contig_2058_256
Type: CAZyme
Location: 328702 - 331452 (-)
Type: CAZyme
Location: 328702 - 331452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.