Cluster: B127.bin_4_CGC46
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 13
- Substrate:
- Genome ID: B127.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B127_contig_6737 | B127_contig_6737_163 | 234227 | 236176 | + | GH110 |
| pfam | B127_contig_6737 | B127_contig_6737_164 | 236221 | 238017 | + | Por_Secre_tail |
| pfam | B127_contig_6737 | B127_contig_6737_165 | 238100 | 239848 | + | Por_Secre_tail |
| CAZyme | B127_contig_6737 | B127_contig_6737_166 | 240038 | 241891 | + | GH127 |
| pfam | B127_contig_6737 | B127_contig_6737_167 | 241927 | 242592 | - | Methyltransf_30 |
| TC | B127_contig_6737 | B127_contig_6737_168 | 242686 | 245067 | + | 1.B.14.6.5 |
| STP | B127_contig_6737 | B127_contig_6737_169 | 245247 | 248258 | + | TPR_1 |
| NULL(UNKNOWN) | B127_contig_6737 | B127_contig_6737_170 | 248273 | 250111 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B127_contig_6737 | B127_contig_6737_171 | 250117 | 250596 | - | CBM57 |
| pfam | B127_contig_6737 | B127_contig_6737_172 | 250612 | 251241 | - | Glyco_hydro_cc |
| sulfatase | B127_contig_6737 | B127_contig_6737_173 | 251328 | 252167 | - | S1_16 |
| CAZyme | B127_contig_6737 | B127_contig_6737_174 | 252535 | 253629 | - | GH2 |
| CAZyme | B127_contig_6737 | B127_contig_6737_175 | 254069 | 255571 | - | GH43_9 |
| CAZyme | B127_contig_6737 | B127_contig_6737_176 | 255582 | 256631 | - | GH110 |
| CAZyme | B127_contig_6737 | B127_contig_6737_177 | 256734 | 257468 | - | GH110 |
| CAZyme | B127_contig_6737 | B127_contig_6737_178 | 257494 | 258681 | - | GH43 |
| CAZyme | B127_contig_6737 | B127_contig_6737_179 | 258688 | 259830 | - | GH43 |
| CAZyme | B127_contig_6737 | B127_contig_6737_180 | 259842 | 261551 | - | GH110 |
| CAZyme | B127_contig_6737 | B127_contig_6737_181 | 261561 | 263258 | - | GH110 |
| pfam | B127_contig_6737 | B127_contig_6737_182 | 263398 | 264699 | - | PKD | BT_3987-like_N | DUF5013 | PKD_4 |
| pfam | B127_contig_6737 | B127_contig_6737_183 | 264731 | 266461 | - | SusD_RagB | SusD-like_3 |
| TC | B127_contig_6737 | B127_contig_6737_184 | 266480 | 269266 | - | 1.B.14.6.1 |
| pfam | B127_contig_6737 | B127_contig_6737_185 | 269305 | 271044 | - | SusD_RagB | SusD-like_3 |
| TC | B127_contig_6737 | B127_contig_6737_186 | 271058 | 274273 | - | 1.B.14.6.1 |
| CAZyme | B127_contig_6737 | B127_contig_6737_187 | 274746 | 276491 | + | GH110 |
| CAZyme | B127_contig_6737 | B127_contig_6737_188 | 276508 | 277974 | + | GH27 |
Gene ID: B127_contig_6737_163
Type: CAZyme
Location: 234227 - 236176 (+)
Type: CAZyme
Location: 234227 - 236176 (+)
Gene ID: B127_contig_6737_164
Type: pfam
Location: 236221 - 238017 (+)
Type: pfam
Location: 236221 - 238017 (+)
Gene ID: B127_contig_6737_165
Type: pfam
Location: 238100 - 239848 (+)
Type: pfam
Location: 238100 - 239848 (+)
Gene ID: B127_contig_6737_166
Type: CAZyme
Location: 240038 - 241891 (+)
Type: CAZyme
Location: 240038 - 241891 (+)
Gene ID: B127_contig_6737_167
Type: pfam
Location: 241927 - 242592 (-)
Type: pfam
Location: 241927 - 242592 (-)
Gene ID: B127_contig_6737_168
Type: TC
Location: 242686 - 245067 (+)
Type: TC
Location: 242686 - 245067 (+)
Gene ID: B127_contig_6737_169
Type: STP
Location: 245247 - 248258 (+)
Type: STP
Location: 245247 - 248258 (+)
Gene ID: B127_contig_6737_170
Type:
Location: 248273 - 250111 (+)
Type:
Location: 248273 - 250111 (+)
Gene ID: B127_contig_6737_171
Type: CAZyme
Location: 250117 - 250596 (-)
Type: CAZyme
Location: 250117 - 250596 (-)
Gene ID: B127_contig_6737_172
Type: pfam
Location: 250612 - 251241 (-)
Type: pfam
Location: 250612 - 251241 (-)
Gene ID: B127_contig_6737_173
Type: sulfatase
Location: 251328 - 252167 (-)
Type: sulfatase
Location: 251328 - 252167 (-)
Gene ID: B127_contig_6737_174
Type: CAZyme
Location: 252535 - 253629 (-)
Type: CAZyme
Location: 252535 - 253629 (-)
Gene ID: B127_contig_6737_175
Type: CAZyme
Location: 254069 - 255571 (-)
Type: CAZyme
Location: 254069 - 255571 (-)
Gene ID: B127_contig_6737_176
Type: CAZyme
Location: 255582 - 256631 (-)
Type: CAZyme
Location: 255582 - 256631 (-)
Gene ID: B127_contig_6737_177
Type: CAZyme
Location: 256734 - 257468 (-)
Type: CAZyme
Location: 256734 - 257468 (-)
Gene ID: B127_contig_6737_178
Type: CAZyme
Location: 257494 - 258681 (-)
Type: CAZyme
Location: 257494 - 258681 (-)
Gene ID: B127_contig_6737_179
Type: CAZyme
Location: 258688 - 259830 (-)
Type: CAZyme
Location: 258688 - 259830 (-)
Gene ID: B127_contig_6737_180
Type: CAZyme
Location: 259842 - 261551 (-)
Type: CAZyme
Location: 259842 - 261551 (-)
Gene ID: B127_contig_6737_181
Type: CAZyme
Location: 261561 - 263258 (-)
Type: CAZyme
Location: 261561 - 263258 (-)
Gene ID: B127_contig_6737_182
Type: pfam
Location: 263398 - 264699 (-)
Type: pfam
Location: 263398 - 264699 (-)
Gene ID: B127_contig_6737_183
Type: pfam
Location: 264731 - 266461 (-)
Type: pfam
Location: 264731 - 266461 (-)
Gene ID: B127_contig_6737_184
Type: TC
Location: 266480 - 269266 (-)
Type: TC
Location: 266480 - 269266 (-)
Gene ID: B127_contig_6737_185
Type: pfam
Location: 269305 - 271044 (-)
Type: pfam
Location: 269305 - 271044 (-)
Gene ID: B127_contig_6737_186
Type: TC
Location: 271058 - 274273 (-)
Type: TC
Location: 271058 - 274273 (-)
Gene ID: B127_contig_6737_187
Type: CAZyme
Location: 274746 - 276491 (+)
Type: CAZyme
Location: 274746 - 276491 (+)
Gene ID: B127_contig_6737_188
Type: CAZyme
Location: 276508 - 277974 (+)
Type: CAZyme
Location: 276508 - 277974 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.