Cluster: B127.bin_4_CGC45
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: B127.bin_4
- CGC Family ID: CGCFAM_07423
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B127_contig_6737 | B127_contig_6737_79 | 120907 | 122181 | + | GT4 |
| CAZyme | B127_contig_6737 | B127_contig_6737_80 | 122178 | 122930 | + | GT2 |
| CAZyme | B127_contig_6737 | B127_contig_6737_81 | 122936 | 123799 | - | GT11 |
| CAZyme | B127_contig_6737 | B127_contig_6737_82 | 123874 | 124863 | + | GT2 |
| pfam | B127_contig_6737 | B127_contig_6737_83 | 124893 | 125594 | - | DNA_alkylation |
| pfam | B127_contig_6737 | B127_contig_6737_84 | 125602 | 126579 | - | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored |
| TC | B127_contig_6737 | B127_contig_6737_85 | 126958 | 128190 | + | 9.B.156.3.1 |
| pfam | B127_contig_6737 | B127_contig_6737_86 | 128318 | 128743 | + | YbeY |
| TC | B127_contig_6737 | B127_contig_6737_87 | 128777 | 130651 | + | 1.C.39.4.5 |
Gene ID: B127_contig_6737_79
Type: CAZyme
Location: 120907 - 122181 (+)
Type: CAZyme
Location: 120907 - 122181 (+)
Gene ID: B127_contig_6737_80
Type: CAZyme
Location: 122178 - 122930 (+)
Type: CAZyme
Location: 122178 - 122930 (+)
Gene ID: B127_contig_6737_81
Type: CAZyme
Location: 122936 - 123799 (-)
Type: CAZyme
Location: 122936 - 123799 (-)
Gene ID: B127_contig_6737_82
Type: CAZyme
Location: 123874 - 124863 (+)
Type: CAZyme
Location: 123874 - 124863 (+)
Gene ID: B127_contig_6737_83
Type: pfam
Location: 124893 - 125594 (-)
Type: pfam
Location: 124893 - 125594 (-)
Gene ID: B127_contig_6737_84
Type: pfam
Location: 125602 - 126579 (-)
Type: pfam
Location: 125602 - 126579 (-)
Gene ID: B127_contig_6737_85
Type: TC
Location: 126958 - 128190 (+)
Type: TC
Location: 126958 - 128190 (+)
Gene ID: B127_contig_6737_86
Type: pfam
Location: 128318 - 128743 (+)
Type: pfam
Location: 128318 - 128743 (+)
Gene ID: B127_contig_6737_87
Type: TC
Location: 128777 - 130651 (+)
Type: TC
Location: 128777 - 130651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.