Cluster: B127.bin_4_CGC40
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: B127.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B127_contig_931 | B127_contig_931_41 | 54646 | 56028 | + | 2.A.2.3.6 |
| pfam | B127_contig_931 | B127_contig_931_42 | 56009 | 57196 | + | GlcNAc_2-epim |
| CAZyme | B127_contig_931 | B127_contig_931_43 | 57517 | 59727 | - | GH3 |
| TF | B127_contig_931 | B127_contig_931_44 | 59952 | 63971 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | B127_contig_931 | B127_contig_931_45 | 64068 | 64163 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B127_contig_931 | B127_contig_931_46 | 64328 | 67408 | + | 1.B.14.6.1 |
| pfam | B127_contig_931 | B127_contig_931_47 | 67440 | 68966 | + | SusD_RagB | SusD-like_3 |
| CAZyme | B127_contig_931 | B127_contig_931_48 | 69004 | 70089 | + | GH43_3 |
| pfam | B127_contig_931 | B127_contig_931_49 | 70186 | 72003 | + | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| CAZyme | B127_contig_931 | B127_contig_931_50 | 72008 | 73033 | + | GH43_26 |
| CAZyme | B127_contig_931 | B127_contig_931_51 | 73079 | 75103 | + | GH182 |
| pfam | B127_contig_931 | B127_contig_931_52 | 75181 | 76644 | - | Caps_assemb_Wzi |
| pfam | B127_contig_931 | B127_contig_931_53 | 76649 | 77053 | - | Lipocalin_8 |
| CAZyme | B127_contig_931 | B127_contig_931_54 | 77172 | 78260 | - | GT4 |
Gene ID: B127_contig_931_41
Type: TC
Location: 54646 - 56028 (+)
Type: TC
Location: 54646 - 56028 (+)
Gene ID: B127_contig_931_42
Type: pfam
Location: 56009 - 57196 (+)
Type: pfam
Location: 56009 - 57196 (+)
Gene ID: B127_contig_931_43
Type: CAZyme
Location: 57517 - 59727 (-)
Type: CAZyme
Location: 57517 - 59727 (-)
Gene ID: B127_contig_931_44
Type: TF
Location: 59952 - 63971 (+)
Type: TF
Location: 59952 - 63971 (+)
Gene ID: B127_contig_931_45
Type:
Location: 64068 - 64163 (+)
Type:
Location: 64068 - 64163 (+)
Gene ID: B127_contig_931_46
Type: TC
Location: 64328 - 67408 (+)
Type: TC
Location: 64328 - 67408 (+)
Gene ID: B127_contig_931_47
Type: pfam
Location: 67440 - 68966 (+)
Type: pfam
Location: 67440 - 68966 (+)
Gene ID: B127_contig_931_48
Type: CAZyme
Location: 69004 - 70089 (+)
Type: CAZyme
Location: 69004 - 70089 (+)
Gene ID: B127_contig_931_49
Type: pfam
Location: 70186 - 72003 (+)
Type: pfam
Location: 70186 - 72003 (+)
Gene ID: B127_contig_931_50
Type: CAZyme
Location: 72008 - 73033 (+)
Type: CAZyme
Location: 72008 - 73033 (+)
Gene ID: B127_contig_931_51
Type: CAZyme
Location: 73079 - 75103 (+)
Type: CAZyme
Location: 73079 - 75103 (+)
Gene ID: B127_contig_931_52
Type: pfam
Location: 75181 - 76644 (-)
Type: pfam
Location: 75181 - 76644 (-)
Gene ID: B127_contig_931_53
Type: pfam
Location: 76649 - 77053 (-)
Type: pfam
Location: 76649 - 77053 (-)
Gene ID: B127_contig_931_54
Type: CAZyme
Location: 77172 - 78260 (-)
Type: CAZyme
Location: 77172 - 78260 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.