Cluster: B127.bin_4_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: B127.bin_4
- CGC Family ID: CGCFAM_00332
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B127_contig_223 | B127_contig_223_75 | 130561 | 133542 | - | 1.B.14.6.1 |
| pfam | B127_contig_223 | B127_contig_223_76 | 133587 | 135395 | - | SusD_RagB | SusD-like_3 |
| TC | B127_contig_223 | B127_contig_223_77 | 135407 | 138598 | - | 1.B.14.6.1 |
| CAZyme | B127_contig_223 | B127_contig_223_78 | 138888 | 140024 | - | CE1 |
| NULL(UNKNOWN) | B127_contig_223 | B127_contig_223_79 | 140066 | 141979 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B127_contig_223 | B127_contig_223_80 | 141976 | 143541 | - | GH20 |
| CAZyme | B127_contig_223 | B127_contig_223_81 | 143552 | 146350 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | B127_contig_223 | B127_contig_223_82 | 146354 | 148030 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B127_contig_223 | B127_contig_223_83 | 148086 | 149408 | - | GH37 |
| CAZyme | B127_contig_223 | B127_contig_223_84 | 149418 | 151811 | - | GH3 |
| pfam | B127_contig_223 | B127_contig_223_85 | 151983 | 152807 | - | GDPD |
| TF | B127_contig_223 | B127_contig_223_86 | 152883 | 156926 | - | HTH_AraC | HTH_AraC |
| CAZyme | B127_contig_223 | B127_contig_223_87 | 157186 | 158910 | + | GH78 |
| CAZyme | B127_contig_223 | B127_contig_223_88 | 158945 | 162163 | + | GH106 |
Gene ID: B127_contig_223_75
Type: TC
Location: 130561 - 133542 (-)
Type: TC
Location: 130561 - 133542 (-)
Gene ID: B127_contig_223_76
Type: pfam
Location: 133587 - 135395 (-)
Type: pfam
Location: 133587 - 135395 (-)
Gene ID: B127_contig_223_77
Type: TC
Location: 135407 - 138598 (-)
Type: TC
Location: 135407 - 138598 (-)
Gene ID: B127_contig_223_78
Type: CAZyme
Location: 138888 - 140024 (-)
Type: CAZyme
Location: 138888 - 140024 (-)
Gene ID: B127_contig_223_79
Type:
Location: 140066 - 141979 (-)
Type:
Location: 140066 - 141979 (-)
Gene ID: B127_contig_223_80
Type: CAZyme
Location: 141976 - 143541 (-)
Type: CAZyme
Location: 141976 - 143541 (-)
Gene ID: B127_contig_223_81
Type: CAZyme
Location: 143552 - 146350 (-)
Type: CAZyme
Location: 143552 - 146350 (-)
Gene ID: B127_contig_223_82
Type:
Location: 146354 - 148030 (-)
Type:
Location: 146354 - 148030 (-)
Gene ID: B127_contig_223_83
Type: CAZyme
Location: 148086 - 149408 (-)
Type: CAZyme
Location: 148086 - 149408 (-)
Gene ID: B127_contig_223_84
Type: CAZyme
Location: 149418 - 151811 (-)
Type: CAZyme
Location: 149418 - 151811 (-)
Gene ID: B127_contig_223_85
Type: pfam
Location: 151983 - 152807 (-)
Type: pfam
Location: 151983 - 152807 (-)
Gene ID: B127_contig_223_86
Type: TF
Location: 152883 - 156926 (-)
Type: TF
Location: 152883 - 156926 (-)
Gene ID: B127_contig_223_87
Type: CAZyme
Location: 157186 - 158910 (+)
Type: CAZyme
Location: 157186 - 158910 (+)
Gene ID: B127_contig_223_88
Type: CAZyme
Location: 158945 - 162163 (+)
Type: CAZyme
Location: 158945 - 162163 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B127_contig_223_77 | vegetarian > omnivore | 1.56599 | 0.03323 |
| B127_contig_223_77 | vegetarian > vegan | 2.62288 | 0.01757 |
| B127_contig_223_78 | vegetarian > omnivore | 1.43058 | 0.03323 |
| B127_contig_223_78 | vegetarian > vegan | 1.33575 | 0.01757 |
| B127_contig_223_79 | vegetarian > vegan | 1.58998 | 0.01757 |
| B127_contig_223_79 | vegetarian > omnivore | 1.63305 | 0.03323 |
| B127_contig_223_80 | vegetarian > vegan | 1.85427 | 0.01757 |
| B127_contig_223_80 | vegetarian > omnivore | 1.58738 | 0.03323 |
| B127_contig_223_81 | vegetarian > omnivore | 2.19289 | 0.03323 |
| B127_contig_223_81 | vegetarian > vegan | 2.40946 | 0.01757 |
| B127_contig_223_82 | vegetarian > omnivore | 1.35810 | 0.03323 |
| B127_contig_223_82 | vegetarian > vegan | 1.77578 | 0.01757 |
| B127_contig_223_83 | vegetarian > omnivore | 1.49337 | 0.03323 |
| B127_contig_223_83 | vegetarian > vegan | 2.11495 | 0.01757 |
| B127_contig_223_84 | vegetarian > omnivore | 1.71996 | 0.03323 |
| B127_contig_223_84 | vegetarian > vegan | 2.49206 | 0.01757 |
| B127_contig_223_85 | vegetarian > omnivore | 1.66164 | 0.03323 |
| B127_contig_223_85 | vegetarian > vegan | 1.84911 | 0.01757 |
| B127_contig_223_86 | vegetarian > omnivore | 1.27314 | 0.03323 |
| B127_contig_223_86 | vegetarian > vegan | 1.67663 | 0.01757 |
| B127_contig_223_87 | vegetarian > omnivore | 1.06303 | 0.03323 |
| B127_contig_223_87 | vegetarian > vegan | 1.94409 | 0.01757 |
| B127_contig_223_88 | vegetarian > vegan | 2.62399 | 0.01757 |