Cluster: B127.bin_4_CGC12
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: B127.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B127_contig_2079 | B127_contig_2079_34 | 71584 | 74259 | - | CBM20 | GH77 |
| NULL(UNKNOWN) | B127_contig_2079 | B127_contig_2079_35 | 74794 | 75531 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B127_contig_2079 | B127_contig_2079_36 | 75616 | 78699 | + | 1.B.14.6.1 |
| TC | B127_contig_2079 | B127_contig_2079_37 | 78713 | 80170 | + | 8.A.46.1.2 |
| NULL(UNKNOWN) | B127_contig_2079 | B127_contig_2079_38 | 80201 | 80809 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B127_contig_2079 | B127_contig_2079_39 | 80845 | 81993 | + | GH105 |
| CAZyme | B127_contig_2079 | B127_contig_2079_40 | 82034 | 83926 | + | PL33_2 |
| TF | B127_contig_2079 | B127_contig_2079_41 | 83961 | 88070 | + | HTH_AraC |
| NULL(UNKNOWN) | B127_contig_2079 | B127_contig_2079_42 | 88215 | 89051 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B127_contig_2079 | B127_contig_2079_43 | 89052 | 92255 | + | PL8 |
| pfam | B127_contig_2079 | B127_contig_2079_44 | 92874 | 94028 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| pfam | B127_contig_2079 | B127_contig_2079_45 | 94057 | 95424 | - | Aldedh | LuxC |
| TC | B127_contig_2079 | B127_contig_2079_46 | 95944 | 97371 | + | 2.A.6.2.46 |
| TC | B127_contig_2079 | B127_contig_2079_47 | 97422 | 98567 | + | 2.A.6.2.34 |
| TC | B127_contig_2079 | B127_contig_2079_48 | 98599 | 101751 | + | 2.A.6.2.16 |
Gene ID: B127_contig_2079_34
Type: CAZyme
Location: 71584 - 74259 (-)
Type: CAZyme
Location: 71584 - 74259 (-)
Gene ID: B127_contig_2079_35
Type:
Location: 74794 - 75531 (+)
Type:
Location: 74794 - 75531 (+)
Gene ID: B127_contig_2079_36
Type: TC
Location: 75616 - 78699 (+)
Type: TC
Location: 75616 - 78699 (+)
Gene ID: B127_contig_2079_37
Type: TC
Location: 78713 - 80170 (+)
Type: TC
Location: 78713 - 80170 (+)
Gene ID: B127_contig_2079_38
Type:
Location: 80201 - 80809 (+)
Type:
Location: 80201 - 80809 (+)
Gene ID: B127_contig_2079_39
Type: CAZyme
Location: 80845 - 81993 (+)
Type: CAZyme
Location: 80845 - 81993 (+)
Gene ID: B127_contig_2079_40
Type: CAZyme
Location: 82034 - 83926 (+)
Type: CAZyme
Location: 82034 - 83926 (+)
Gene ID: B127_contig_2079_41
Type: TF
Location: 83961 - 88070 (+)
Type: TF
Location: 83961 - 88070 (+)
Gene ID: B127_contig_2079_42
Type:
Location: 88215 - 89051 (+)
Type:
Location: 88215 - 89051 (+)
Gene ID: B127_contig_2079_43
Type: CAZyme
Location: 89052 - 92255 (+)
Type: CAZyme
Location: 89052 - 92255 (+)
Gene ID: B127_contig_2079_44
Type: pfam
Location: 92874 - 94028 (-)
Type: pfam
Location: 92874 - 94028 (-)
Gene ID: B127_contig_2079_45
Type: pfam
Location: 94057 - 95424 (-)
Type: pfam
Location: 94057 - 95424 (-)
Gene ID: B127_contig_2079_46
Type: TC
Location: 95944 - 97371 (+)
Type: TC
Location: 95944 - 97371 (+)
Gene ID: B127_contig_2079_47
Type: TC
Location: 97422 - 98567 (+)
Type: TC
Location: 97422 - 98567 (+)
Gene ID: B127_contig_2079_48
Type: TC
Location: 98599 - 101751 (+)
Type: TC
Location: 98599 - 101751 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.