Cluster: B127.bin_4_CGC11
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate: pectin/host glycan
- Genome ID: B127.bin_4
- CGC Family ID: CGCFAM_00110
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B127_contig_2079 | B127_contig_2079_10 | 20088 | 23300 | + | 1.B.14.6.1 |
| pfam | B127_contig_2079 | B127_contig_2079_11 | 23313 | 25145 | + | SusD_RagB | SusD-like_3 |
| sulfatase | B127_contig_2079 | B127_contig_2079_12 | 25377 | 26954 | + | S1_11 |
| CAZyme | B127_contig_2079 | B127_contig_2079_13 | 26968 | 29280 | + | GH20 |
| sulfatase | B127_contig_2079 | B127_contig_2079_14 | 29393 | 30943 | + | S1_15 |
| CAZyme | B127_contig_2079 | B127_contig_2079_15 | 30981 | 34085 | + | GH2 |
| CAZyme | B127_contig_2079 | B127_contig_2079_16 | 34344 | 37031 | + | GH2 |
| pfam | B127_contig_2079 | B127_contig_2079_17 | 37288 | 37668 | + | PDDEXK_3 |
| TF | B127_contig_2079 | B127_contig_2079_18 | 38458 | 42399 | - | HTH_AraC |
| CAZyme | B127_contig_2079 | B127_contig_2079_19 | 42616 | 43704 | - | GH18 |
| NULL(UNKNOWN) | B127_contig_2079 | B127_contig_2079_20 | 43916 | 44965 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B127_contig_2079 | B127_contig_2079_21 | 45152 | 47755 | + | Laminin_G_3 |
| TC | B127_contig_2079 | B127_contig_2079_22 | 47872 | 51153 | + | 1.B.14.6.1 |
| pfam | B127_contig_2079 | B127_contig_2079_23 | 51166 | 53079 | + | SusD_RagB | SusD-like_3 |
| CAZyme | B127_contig_2079 | B127_contig_2079_24 | 53257 | 55581 | + | GH20 |
| CAZyme | B127_contig_2079 | B127_contig_2079_25 | 56625 | 58532 | + | CBM32 | GH29 |
| CAZyme | B127_contig_2079 | B127_contig_2079_26 | 58593 | 61094 | + | GH2 |
Gene ID: B127_contig_2079_10
Type: TC
Location: 20088 - 23300 (+)
Type: TC
Location: 20088 - 23300 (+)
Gene ID: B127_contig_2079_11
Type: pfam
Location: 23313 - 25145 (+)
Type: pfam
Location: 23313 - 25145 (+)
Gene ID: B127_contig_2079_12
Type: sulfatase
Location: 25377 - 26954 (+)
Type: sulfatase
Location: 25377 - 26954 (+)
Gene ID: B127_contig_2079_13
Type: CAZyme
Location: 26968 - 29280 (+)
Type: CAZyme
Location: 26968 - 29280 (+)
Gene ID: B127_contig_2079_14
Type: sulfatase
Location: 29393 - 30943 (+)
Type: sulfatase
Location: 29393 - 30943 (+)
Gene ID: B127_contig_2079_15
Type: CAZyme
Location: 30981 - 34085 (+)
Type: CAZyme
Location: 30981 - 34085 (+)
Gene ID: B127_contig_2079_16
Type: CAZyme
Location: 34344 - 37031 (+)
Type: CAZyme
Location: 34344 - 37031 (+)
Gene ID: B127_contig_2079_17
Type: pfam
Location: 37288 - 37668 (+)
Type: pfam
Location: 37288 - 37668 (+)
Gene ID: B127_contig_2079_18
Type: TF
Location: 38458 - 42399 (-)
Type: TF
Location: 38458 - 42399 (-)
Gene ID: B127_contig_2079_19
Type: CAZyme
Location: 42616 - 43704 (-)
Type: CAZyme
Location: 42616 - 43704 (-)
Gene ID: B127_contig_2079_20
Type:
Location: 43916 - 44965 (+)
Type:
Location: 43916 - 44965 (+)
Gene ID: B127_contig_2079_21
Type: pfam
Location: 45152 - 47755 (+)
Type: pfam
Location: 45152 - 47755 (+)
Gene ID: B127_contig_2079_22
Type: TC
Location: 47872 - 51153 (+)
Type: TC
Location: 47872 - 51153 (+)
Gene ID: B127_contig_2079_23
Type: pfam
Location: 51166 - 53079 (+)
Type: pfam
Location: 51166 - 53079 (+)
Gene ID: B127_contig_2079_24
Type: CAZyme
Location: 53257 - 55581 (+)
Type: CAZyme
Location: 53257 - 55581 (+)
Gene ID: B127_contig_2079_25
Type: CAZyme
Location: 56625 - 58532 (+)
Type: CAZyme
Location: 56625 - 58532 (+)
Gene ID: B127_contig_2079_26
Type: CAZyme
Location: 58593 - 61094 (+)
Type: CAZyme
Location: 58593 - 61094 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter secundus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.