Cluster: B111.bin_19_CGC2
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: B111.bin_19
- CGC Family ID: CGCFAM_04860
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B111_contig_1835 | B111_contig_1835_64 | 70013 | 71167 | + | 2.A.1.7.16 |
| CAZyme | B111_contig_1835 | B111_contig_1835_65 | 71256 | 73604 | + | GH92 |
| pfam | B111_contig_1835 | B111_contig_1835_66 | 73624 | 74526 | + | ROK |
| NULL(UNKNOWN) | B111_contig_1835 | B111_contig_1835_67 | 74540 | 76306 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B111_contig_1835 | B111_contig_1835_68 | 76403 | 79165 | + | GH92 |
| TC | B111_contig_1835 | B111_contig_1835_69 | 80176 | 82866 | + | 1.B.14.6.1 |
| TC | B111_contig_1835 | B111_contig_1835_70 | 82890 | 84533 | + | 8.A.46.1.6 |
| pfam | B111_contig_1835 | B111_contig_1835_71 | 84557 | 85483 | + | Laminin_G_3 |
| CAZyme | B111_contig_1835 | B111_contig_1835_72 | 85499 | 88942 | + | GH38 |
Gene ID: B111_contig_1835_64
Type: TC
Location: 70013 - 71167 (+)
Type: TC
Location: 70013 - 71167 (+)
Gene ID: B111_contig_1835_65
Type: CAZyme
Location: 71256 - 73604 (+)
Type: CAZyme
Location: 71256 - 73604 (+)
Gene ID: B111_contig_1835_66
Type: pfam
Location: 73624 - 74526 (+)
Type: pfam
Location: 73624 - 74526 (+)
Gene ID: B111_contig_1835_67
Type:
Location: 74540 - 76306 (+)
Type:
Location: 74540 - 76306 (+)
Gene ID: B111_contig_1835_68
Type: CAZyme
Location: 76403 - 79165 (+)
Type: CAZyme
Location: 76403 - 79165 (+)
Gene ID: B111_contig_1835_69
Type: TC
Location: 80176 - 82866 (+)
Type: TC
Location: 80176 - 82866 (+)
Gene ID: B111_contig_1835_70
Type: TC
Location: 82890 - 84533 (+)
Type: TC
Location: 82890 - 84533 (+)
Gene ID: B111_contig_1835_71
Type: pfam
Location: 84557 - 85483 (+)
Type: pfam
Location: 84557 - 85483 (+)
Gene ID: B111_contig_1835_72
Type: CAZyme
Location: 85499 - 88942 (+)
Type: CAZyme
Location: 85499 - 88942 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes onderdonkii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B111_contig_1835_64 | omnivore > vegan | 1.07966 | 0.04414 |
| B111_contig_1835_66 | omnivore > vegan | 1.03549 | 0.04414 |
| B111_contig_1835_68 | omnivore > vegan | 1.01915 | 0.04414 |
| B111_contig_1835_69 | omnivore > vegan | 1.08725 | 0.04414 |
| B111_contig_1835_70 | omnivore > vegan | 1.20907 | 0.04414 |
| B111_contig_1835_71 | omnivore > vegan | 1.12082 | 0.04414 |
| B111_contig_1835_72 | omnivore > vegan | 1.24316 | 0.04414 |