Cluster: B1.bin_1_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: B1.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B1_contig_1146 | B1_contig_1146_397 | 470288 | 471955 | - | GH13_29 |
| TC | B1_contig_1146 | B1_contig_1146_398 | 472159 | 473580 | - | 4.A.1.2.13 |
| pfam | B1_contig_1146 | B1_contig_1146_399 | 473928 | 475013 | - | DUF4179 |
| STP | B1_contig_1146 | B1_contig_1146_400 | 475006 | 475581 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | B1_contig_1146 | B1_contig_1146_401 | 475839 | 477392 | - | 3.A.1.12.8 |
| TC | B1_contig_1146 | B1_contig_1146_402 | 477385 | 478521 | - | 3.A.1.12.4 |
| pfam | B1_contig_1146 | B1_contig_1146_403 | 479827 | 480483 | - | Flavodoxin_2 | FMN_red |
| TC | B1_contig_1146 | B1_contig_1146_404 | 480775 | 483444 | + | 3.A.3.5.15 |
| pfam | B1_contig_1146 | B1_contig_1146_405 | 483557 | 484198 | - | Peptidase_M73 |
| CAZyme | B1_contig_1146 | B1_contig_1146_406 | 484344 | 487865 | - | CBM32 | CBM40 | GH33 |
Gene ID: B1_contig_1146_397
Type: CAZyme
Location: 470288 - 471955 (-)
Type: CAZyme
Location: 470288 - 471955 (-)
Gene ID: B1_contig_1146_398
Type: TC
Location: 472159 - 473580 (-)
Type: TC
Location: 472159 - 473580 (-)
Gene ID: B1_contig_1146_399
Type: pfam
Location: 473928 - 475013 (-)
Type: pfam
Location: 473928 - 475013 (-)
Gene ID: B1_contig_1146_400
Type: STP
Location: 475006 - 475581 (-)
Type: STP
Location: 475006 - 475581 (-)
Gene ID: B1_contig_1146_401
Type: TC
Location: 475839 - 477392 (-)
Type: TC
Location: 475839 - 477392 (-)
Gene ID: B1_contig_1146_402
Type: TC
Location: 477385 - 478521 (-)
Type: TC
Location: 477385 - 478521 (-)
Gene ID: B1_contig_1146_403
Type: pfam
Location: 479827 - 480483 (-)
Type: pfam
Location: 479827 - 480483 (-)
Gene ID: B1_contig_1146_404
Type: TC
Location: 480775 - 483444 (+)
Type: TC
Location: 480775 - 483444 (+)
Gene ID: B1_contig_1146_405
Type: pfam
Location: 483557 - 484198 (-)
Type: pfam
Location: 483557 - 484198 (-)
Gene ID: B1_contig_1146_406
Type: CAZyme
Location: 484344 - 487865 (-)
Type: CAZyme
Location: 484344 - 487865 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.