Cluster: B1.bin_1_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_00242
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_1146 | B1_contig_1146_381 | 449733 | 450428 | - | 9.B.27.1.2 |
| TC | B1_contig_1146 | B1_contig_1146_382 | 450775 | 451656 | - | 3.A.1.1.18 |
| TC | B1_contig_1146 | B1_contig_1146_383 | 451658 | 452584 | - | 3.A.1.1.18 |
| STP | B1_contig_1146 | B1_contig_1146_384 | 452663 | 454048 | - | SBP_bac_1 |
| TF | B1_contig_1146 | B1_contig_1146_385 | 454201 | 455790 | - | HTH_AraC | HTH_AraC |
| TC | B1_contig_1146 | B1_contig_1146_386 | 455803 | 457554 | - | 8.A.59.2.1 |
| CAZyme | B1_contig_1146 | B1_contig_1146_387 | 457739 | 459943 | - | GH112 |
Gene ID: B1_contig_1146_381
Type: TC
Location: 449733 - 450428 (-)
Type: TC
Location: 449733 - 450428 (-)
Gene ID: B1_contig_1146_382
Type: TC
Location: 450775 - 451656 (-)
Type: TC
Location: 450775 - 451656 (-)
Gene ID: B1_contig_1146_383
Type: TC
Location: 451658 - 452584 (-)
Type: TC
Location: 451658 - 452584 (-)
Gene ID: B1_contig_1146_384
Type: STP
Location: 452663 - 454048 (-)
Type: STP
Location: 452663 - 454048 (-)
Gene ID: B1_contig_1146_385
Type: TF
Location: 454201 - 455790 (-)
Type: TF
Location: 454201 - 455790 (-)
Gene ID: B1_contig_1146_386
Type: TC
Location: 455803 - 457554 (-)
Type: TC
Location: 455803 - 457554 (-)
Gene ID: B1_contig_1146_387
Type: CAZyme
Location: 457739 - 459943 (-)
Type: CAZyme
Location: 457739 - 459943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.