Cluster: B1.bin_1_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_00537
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_1146 | B1_contig_1146_173 | 187461 | 188840 | + | 2.A.8.1.13 |
| CAZyme | B1_contig_1146 | B1_contig_1146_174 | 189102 | 192140 | - | GH2 |
| pfam | B1_contig_1146 | B1_contig_1146_175 | 192501 | 193553 | + | rve | HTH_38 |
| TF | B1_contig_1146 | B1_contig_1146_176 | 193728 | 194567 | + | HTH_AraC | HTH_AraC |
| TC | B1_contig_1146 | B1_contig_1146_177 | 194790 | 196154 | - | 2.A.2.3.2 |
Gene ID: B1_contig_1146_173
Type: TC
Location: 187461 - 188840 (+)
Type: TC
Location: 187461 - 188840 (+)
Gene ID: B1_contig_1146_174
Type: CAZyme
Location: 189102 - 192140 (-)
Type: CAZyme
Location: 189102 - 192140 (-)
Gene ID: B1_contig_1146_175
Type: pfam
Location: 192501 - 193553 (+)
Type: pfam
Location: 192501 - 193553 (+)
Gene ID: B1_contig_1146_176
Type: TF
Location: 193728 - 194567 (+)
Type: TF
Location: 193728 - 194567 (+)
Gene ID: B1_contig_1146_177
Type: TC
Location: 194790 - 196154 (-)
Type: TC
Location: 194790 - 196154 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.