Cluster: B1.bin_1_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_00620
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B1_contig_3444 | B1_contig_3444_28 | 47461 | 48462 | + | GH177 |
| pfam | B1_contig_3444 | B1_contig_3444_29 | 48581 | 49474 | + | AP_endonuc_2 |
| TC | B1_contig_3444 | B1_contig_3444_30 | 49556 | 51145 | + | 2.A.21.3.21 |
| CAZyme | B1_contig_3444 | B1_contig_3444_31 | 51233 | 52282 | + | GH177 |
| TC | B1_contig_3444 | B1_contig_3444_32 | 52654 | 53412 | + | 1.A.16.3.3 |
Gene ID: B1_contig_3444_28
Type: CAZyme
Location: 47461 - 48462 (+)
Type: CAZyme
Location: 47461 - 48462 (+)
Gene ID: B1_contig_3444_29
Type: pfam
Location: 48581 - 49474 (+)
Type: pfam
Location: 48581 - 49474 (+)
Gene ID: B1_contig_3444_30
Type: TC
Location: 49556 - 51145 (+)
Type: TC
Location: 49556 - 51145 (+)
Gene ID: B1_contig_3444_31
Type: CAZyme
Location: 51233 - 52282 (+)
Type: CAZyme
Location: 51233 - 52282 (+)
Gene ID: B1_contig_3444_32
Type: TC
Location: 52654 - 53412 (+)
Type: TC
Location: 52654 - 53412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.