Cluster: B1.bin_1_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_00778
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_3444 | B1_contig_3444_1 | 945 | 2267 | + | 2.A.3.2.5 |
| NULL(UNKNOWN) | B1_contig_3444 | B1_contig_3444_2 | 2394 | 2543 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B1_contig_3444 | B1_contig_3444_3 | 2890 | 4914 | + | GH13_9 |
| CAZyme | B1_contig_3444 | B1_contig_3444_4 | 4957 | 6390 | + | GT5 |
| CAZyme | B1_contig_3444 | B1_contig_3444_5 | 6420 | 8855 | + | GT35 |
| CAZyme | B1_contig_3444 | B1_contig_3444_6 | 8951 | 10771 | + | GH13_39 |
Gene ID: B1_contig_3444_1
Type: TC
Location: 945 - 2267 (+)
Type: TC
Location: 945 - 2267 (+)
Gene ID: B1_contig_3444_2
Type:
Location: 2394 - 2543 (+)
Type:
Location: 2394 - 2543 (+)
Gene ID: B1_contig_3444_3
Type: CAZyme
Location: 2890 - 4914 (+)
Type: CAZyme
Location: 2890 - 4914 (+)
Gene ID: B1_contig_3444_4
Type: CAZyme
Location: 4957 - 6390 (+)
Type: CAZyme
Location: 4957 - 6390 (+)
Gene ID: B1_contig_3444_5
Type: CAZyme
Location: 6420 - 8855 (+)
Type: CAZyme
Location: 6420 - 8855 (+)
Gene ID: B1_contig_3444_6
Type: CAZyme
Location: 8951 - 10771 (+)
Type: CAZyme
Location: 8951 - 10771 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.