Cluster: B1.bin_1_CGC36
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_01073
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B1_contig_2285 | B1_contig_2285_1474 | 1646040 | 1648058 | - | GH133 |
| CAZyme | B1_contig_2285 | B1_contig_2285_1475 | 1648531 | 1650894 | - | GT35 |
| CAZyme | B1_contig_2285 | B1_contig_2285_1476 | 1650887 | 1652380 | - | GH77 |
| CAZyme | B1_contig_2285 | B1_contig_2285_1477 | 1652402 | 1654549 | - | GH31_1 |
| TF | B1_contig_2285 | B1_contig_2285_1478 | 1654573 | 1655586 | - | LacI |
| TC | B1_contig_2285 | B1_contig_2285_1479 | 1655881 | 1656774 | - | 3.A.1.1.26 |
| TC | B1_contig_2285 | B1_contig_2285_1480 | 1656776 | 1657729 | - | 3.A.1.1.22 |
| TC | B1_contig_2285 | B1_contig_2285_1481 | 1657816 | 1659042 | - | 3.A.1.1.22 |
| pfam | B1_contig_2285 | B1_contig_2285_1482 | 1659500 | 1660441 | - | HTH_30 |
| TC | B1_contig_2285 | B1_contig_2285_1483 | 1660476 | 1661585 | - | 3.A.1.1.26 |
Gene ID: B1_contig_2285_1474
Type: CAZyme
Location: 1646040 - 1648058 (-)
Type: CAZyme
Location: 1646040 - 1648058 (-)
Gene ID: B1_contig_2285_1475
Type: CAZyme
Location: 1648531 - 1650894 (-)
Type: CAZyme
Location: 1648531 - 1650894 (-)
Gene ID: B1_contig_2285_1476
Type: CAZyme
Location: 1650887 - 1652380 (-)
Type: CAZyme
Location: 1650887 - 1652380 (-)
Gene ID: B1_contig_2285_1477
Type: CAZyme
Location: 1652402 - 1654549 (-)
Type: CAZyme
Location: 1652402 - 1654549 (-)
Gene ID: B1_contig_2285_1478
Type: TF
Location: 1654573 - 1655586 (-)
Type: TF
Location: 1654573 - 1655586 (-)
Gene ID: B1_contig_2285_1479
Type: TC
Location: 1655881 - 1656774 (-)
Type: TC
Location: 1655881 - 1656774 (-)
Gene ID: B1_contig_2285_1480
Type: TC
Location: 1656776 - 1657729 (-)
Type: TC
Location: 1656776 - 1657729 (-)
Gene ID: B1_contig_2285_1481
Type: TC
Location: 1657816 - 1659042 (-)
Type: TC
Location: 1657816 - 1659042 (-)
Gene ID: B1_contig_2285_1482
Type: pfam
Location: 1659500 - 1660441 (-)
Type: pfam
Location: 1659500 - 1660441 (-)
Gene ID: B1_contig_2285_1483
Type: TC
Location: 1660476 - 1661585 (-)
Type: TC
Location: 1660476 - 1661585 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.