Cluster: B1.bin_1_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_00021
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B1_contig_2285 | B1_contig_2285_1230 | 1358957 | 1362091 | - | GH38 |
| TC | B1_contig_2285 | B1_contig_2285_1231 | 1362407 | 1363363 | - | 3.A.1.1.29 |
| TC | B1_contig_2285 | B1_contig_2285_1232 | 1363381 | 1364349 | - | 3.A.1.1.10 |
| pfam | B1_contig_2285 | B1_contig_2285_1233 | 1364579 | 1365055 | - | MoaC |
| TC | B1_contig_2285 | B1_contig_2285_1234 | 1365094 | 1365750 | - | 3.A.1.8.2 |
Gene ID: B1_contig_2285_1230
Type: CAZyme
Location: 1358957 - 1362091 (-)
Type: CAZyme
Location: 1358957 - 1362091 (-)
Gene ID: B1_contig_2285_1231
Type: TC
Location: 1362407 - 1363363 (-)
Type: TC
Location: 1362407 - 1363363 (-)
Gene ID: B1_contig_2285_1232
Type: TC
Location: 1363381 - 1364349 (-)
Type: TC
Location: 1363381 - 1364349 (-)
Gene ID: B1_contig_2285_1233
Type: pfam
Location: 1364579 - 1365055 (-)
Type: pfam
Location: 1364579 - 1365055 (-)
Gene ID: B1_contig_2285_1234
Type: TC
Location: 1365094 - 1365750 (-)
Type: TC
Location: 1365094 - 1365750 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.