Cluster: B1.bin_1_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: B1.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_1146 | B1_contig_1146_127 | 139300 | 140211 | - | 4.A.6.1.6 |
| TC | B1_contig_1146 | B1_contig_1146_128 | 140231 | 141034 | - | 4.A.6.1.6 |
| TC | B1_contig_1146 | B1_contig_1146_129 | 141085 | 142065 | - | 4.A.6.1.6 |
| TC | B1_contig_1146 | B1_contig_1146_130 | 142392 | 143219 | - | 2.A.85.4.3 |
| pfam | B1_contig_1146 | B1_contig_1146_131 | 143366 | 144274 | - | Dala_Dala_lig_N | Dala_Dala_lig_N | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | RimK |
| CAZyme | B1_contig_1146 | B1_contig_1146_132 | 144475 | 147858 | - | CBM32 | GH85 |
Gene ID: B1_contig_1146_127
Type: TC
Location: 139300 - 140211 (-)
Type: TC
Location: 139300 - 140211 (-)
Gene ID: B1_contig_1146_128
Type: TC
Location: 140231 - 141034 (-)
Type: TC
Location: 140231 - 141034 (-)
Gene ID: B1_contig_1146_129
Type: TC
Location: 141085 - 142065 (-)
Type: TC
Location: 141085 - 142065 (-)
Gene ID: B1_contig_1146_130
Type: TC
Location: 142392 - 143219 (-)
Type: TC
Location: 142392 - 143219 (-)
Gene ID: B1_contig_1146_131
Type: pfam
Location: 143366 - 144274 (-)
Type: pfam
Location: 143366 - 144274 (-)
Gene ID: B1_contig_1146_132
Type: CAZyme
Location: 144475 - 147858 (-)
Type: CAZyme
Location: 144475 - 147858 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.