Cluster: B1.bin_1_CGC28
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 3
- Substrate:
- Genome ID: B1.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_2285 | B1_contig_2285_723 | 808758 | 810047 | - | 2.A.40.7.2 |
| pfam | B1_contig_2285 | B1_contig_2285_724 | 810299 | 810667 | - | CoA_binding_2 |
| TC | B1_contig_2285 | B1_contig_2285_725 | 810869 | 811822 | - | 3.A.1.2.12 |
| TC | B1_contig_2285 | B1_contig_2285_726 | 811822 | 812919 | - | 3.A.1.2.17 |
| TC | B1_contig_2285 | B1_contig_2285_727 | 812909 | 814444 | - | 3.A.1.2.17 |
| TC | B1_contig_2285 | B1_contig_2285_728 | 814585 | 815697 | - | 3.A.1.2.10 |
| peptidase | B1_contig_2285 | B1_contig_2285_729 | 816252 | 817073 | - | S09.UPD |
| TC | B1_contig_2285 | B1_contig_2285_730 | 817556 | 818386 | - | 3.A.1.29.1 |
| TC | B1_contig_2285 | B1_contig_2285_731 | 818386 | 820092 | - | 3.A.1.29.1 |
| pfam | B1_contig_2285 | B1_contig_2285_732 | 820251 | 821414 | - | OrfB_IS605 | Cas12f1-like_TNB | HTH_OrfB_IS605 |
| TC | B1_contig_2285 | B1_contig_2285_733 | 821605 | 822162 | - | 3.A.1.29.1 |
| STP | B1_contig_2285 | B1_contig_2285_734 | 822382 | 822834 | + | Rhodanese |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_735 | 822880 | 823203 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B1_contig_2285 | B1_contig_2285_736 | 823345 | 826539 | - | GH13_14 |
| CAZyme | B1_contig_2285 | B1_contig_2285_737 | 826639 | 828633 | - | CBM48 | GH13_9 |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_738 | 828713 | 829420 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B1_contig_2285 | B1_contig_2285_739 | 829662 | 830432 | + | 2.A.79.1.4 |
| pfam | B1_contig_2285 | B1_contig_2285_740 | 830429 | 830920 | + | ThrE | ThrE_2 |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_741 | 831113 | 831880 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B1_contig_2285 | B1_contig_2285_742 | 832228 | 833937 | - | 2.A.1.3.35 |
| pfam | B1_contig_2285 | B1_contig_2285_743 | 834110 | 834433 | - | Thioredoxin |
| CAZyme | B1_contig_2285 | B1_contig_2285_744 | 834529 | 835488 | - | CE7 |
| pfam | B1_contig_2285 | B1_contig_2285_745 | 836182 | 837015 | + | OrfB_IS605 | HTH_OrfB_IS605 |
| pfam | B1_contig_2285 | B1_contig_2285_746 | 837095 | 837370 | + | Cas12f1-like_TNB |
| TC | B1_contig_2285 | B1_contig_2285_747 | 837532 | 838395 | + | 3.A.11.2.1 |
Gene ID: B1_contig_2285_723
Type: TC
Location: 808758 - 810047 (-)
Type: TC
Location: 808758 - 810047 (-)
Gene ID: B1_contig_2285_724
Type: pfam
Location: 810299 - 810667 (-)
Type: pfam
Location: 810299 - 810667 (-)
Gene ID: B1_contig_2285_725
Type: TC
Location: 810869 - 811822 (-)
Type: TC
Location: 810869 - 811822 (-)
Gene ID: B1_contig_2285_726
Type: TC
Location: 811822 - 812919 (-)
Type: TC
Location: 811822 - 812919 (-)
Gene ID: B1_contig_2285_727
Type: TC
Location: 812909 - 814444 (-)
Type: TC
Location: 812909 - 814444 (-)
Gene ID: B1_contig_2285_728
Type: TC
Location: 814585 - 815697 (-)
Type: TC
Location: 814585 - 815697 (-)
Gene ID: B1_contig_2285_729
Type: peptidase
Location: 816252 - 817073 (-)
Type: peptidase
Location: 816252 - 817073 (-)
Gene ID: B1_contig_2285_730
Type: TC
Location: 817556 - 818386 (-)
Type: TC
Location: 817556 - 818386 (-)
Gene ID: B1_contig_2285_731
Type: TC
Location: 818386 - 820092 (-)
Type: TC
Location: 818386 - 820092 (-)
Gene ID: B1_contig_2285_732
Type: pfam
Location: 820251 - 821414 (-)
Type: pfam
Location: 820251 - 821414 (-)
Gene ID: B1_contig_2285_733
Type: TC
Location: 821605 - 822162 (-)
Type: TC
Location: 821605 - 822162 (-)
Gene ID: B1_contig_2285_734
Type: STP
Location: 822382 - 822834 (+)
Type: STP
Location: 822382 - 822834 (+)
Gene ID: B1_contig_2285_735
Type:
Location: 822880 - 823203 (-)
Type:
Location: 822880 - 823203 (-)
Gene ID: B1_contig_2285_736
Type: CAZyme
Location: 823345 - 826539 (-)
Type: CAZyme
Location: 823345 - 826539 (-)
Gene ID: B1_contig_2285_737
Type: CAZyme
Location: 826639 - 828633 (-)
Type: CAZyme
Location: 826639 - 828633 (-)
Gene ID: B1_contig_2285_738
Type:
Location: 828713 - 829420 (-)
Type:
Location: 828713 - 829420 (-)
Gene ID: B1_contig_2285_739
Type: TC
Location: 829662 - 830432 (+)
Type: TC
Location: 829662 - 830432 (+)
Gene ID: B1_contig_2285_740
Type: pfam
Location: 830429 - 830920 (+)
Type: pfam
Location: 830429 - 830920 (+)
Gene ID: B1_contig_2285_741
Type:
Location: 831113 - 831880 (-)
Type:
Location: 831113 - 831880 (-)
Gene ID: B1_contig_2285_742
Type: TC
Location: 832228 - 833937 (-)
Type: TC
Location: 832228 - 833937 (-)
Gene ID: B1_contig_2285_743
Type: pfam
Location: 834110 - 834433 (-)
Type: pfam
Location: 834110 - 834433 (-)
Gene ID: B1_contig_2285_744
Type: CAZyme
Location: 834529 - 835488 (-)
Type: CAZyme
Location: 834529 - 835488 (-)
Gene ID: B1_contig_2285_745
Type: pfam
Location: 836182 - 837015 (+)
Type: pfam
Location: 836182 - 837015 (+)
Gene ID: B1_contig_2285_746
Type: pfam
Location: 837095 - 837370 (+)
Type: pfam
Location: 837095 - 837370 (+)
Gene ID: B1_contig_2285_747
Type: TC
Location: 837532 - 838395 (+)
Type: TC
Location: 837532 - 838395 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.