Cluster: B1.bin_1_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: B1.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_2285 | B1_contig_2285_622 | 701082 | 701729 | + | 1.C.113.1.2 |
| TF | B1_contig_2285 | B1_contig_2285_623 | 701780 | 702664 | - | HTH_1 |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_624 | 702676 | 702960 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B1_contig_2285 | B1_contig_2285_625 | 703136 | 703852 | + | CE4 |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_626 | 703869 | 704405 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_627 | 704524 | 705159 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B1_contig_2285 | B1_contig_2285_628 | 705379 | 707034 | + | 2.A.53.3.11 |
Gene ID: B1_contig_2285_622
Type: TC
Location: 701082 - 701729 (+)
Type: TC
Location: 701082 - 701729 (+)
Gene ID: B1_contig_2285_623
Type: TF
Location: 701780 - 702664 (-)
Type: TF
Location: 701780 - 702664 (-)
Gene ID: B1_contig_2285_624
Type:
Location: 702676 - 702960 (-)
Type:
Location: 702676 - 702960 (-)
Gene ID: B1_contig_2285_625
Type: CAZyme
Location: 703136 - 703852 (+)
Type: CAZyme
Location: 703136 - 703852 (+)
Gene ID: B1_contig_2285_626
Type:
Location: 703869 - 704405 (-)
Type:
Location: 703869 - 704405 (-)
Gene ID: B1_contig_2285_627
Type:
Location: 704524 - 705159 (-)
Type:
Location: 704524 - 705159 (-)
Gene ID: B1_contig_2285_628
Type: TC
Location: 705379 - 707034 (+)
Type: TC
Location: 705379 - 707034 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.