Cluster: B1.bin_1_CGC21
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: B1.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B1_contig_2285 | B1_contig_2285_413 | 452848 | 457614 | - | CBM32 | CBM32 |
| CAZyme | B1_contig_2285 | B1_contig_2285_414 | 457872 | 459635 | + | GH123 |
| CAZyme | B1_contig_2285 | B1_contig_2285_415 | 460021 | 464088 | - | GH2 |
| NULL(UNKNOWN) | B1_contig_2285 | B1_contig_2285_416 | 464502 | 465689 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B1_contig_2285 | B1_contig_2285_417 | 466125 | 467090 | - | Dus |
| TC | B1_contig_2285 | B1_contig_2285_418 | 467194 | 468564 | - | 2.A.66.1.32 |
| pfam | B1_contig_2285 | B1_contig_2285_419 | 468937 | 469278 | - | PqqD |
| TC | B1_contig_2285 | B1_contig_2285_420 | 469290 | 471206 | - | 2.A.67.4.2 |
| TC | B1_contig_2285 | B1_contig_2285_421 | 471957 | 473345 | - | 2.A.1.3.22 |
| TF | B1_contig_2285 | B1_contig_2285_422 | 473764 | 474513 | + | GntR |
| TC | B1_contig_2285 | B1_contig_2285_423 | 474627 | 475808 | - | 2.A.41.1.2 |
Gene ID: B1_contig_2285_413
Type: CAZyme
Location: 452848 - 457614 (-)
Type: CAZyme
Location: 452848 - 457614 (-)
Gene ID: B1_contig_2285_414
Type: CAZyme
Location: 457872 - 459635 (+)
Type: CAZyme
Location: 457872 - 459635 (+)
Gene ID: B1_contig_2285_415
Type: CAZyme
Location: 460021 - 464088 (-)
Type: CAZyme
Location: 460021 - 464088 (-)
Gene ID: B1_contig_2285_416
Type:
Location: 464502 - 465689 (-)
Type:
Location: 464502 - 465689 (-)
Gene ID: B1_contig_2285_417
Type: pfam
Location: 466125 - 467090 (-)
Type: pfam
Location: 466125 - 467090 (-)
Gene ID: B1_contig_2285_418
Type: TC
Location: 467194 - 468564 (-)
Type: TC
Location: 467194 - 468564 (-)
Gene ID: B1_contig_2285_419
Type: pfam
Location: 468937 - 469278 (-)
Type: pfam
Location: 468937 - 469278 (-)
Gene ID: B1_contig_2285_420
Type: TC
Location: 469290 - 471206 (-)
Type: TC
Location: 469290 - 471206 (-)
Gene ID: B1_contig_2285_421
Type: TC
Location: 471957 - 473345 (-)
Type: TC
Location: 471957 - 473345 (-)
Gene ID: B1_contig_2285_422
Type: TF
Location: 473764 - 474513 (+)
Type: TF
Location: 473764 - 474513 (+)
Gene ID: B1_contig_2285_423
Type: TC
Location: 474627 - 475808 (-)
Type: TC
Location: 474627 - 475808 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.