Cluster: B1.bin_1_CGC11
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: B1.bin_1
- CGC Family ID: CGCFAM_00091
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B1_contig_1146 | B1_contig_1146_476 | 561853 | 562488 | - | 2.A.66.1.40 |
| CAZyme | B1_contig_1146 | B1_contig_1146_477 | 562499 | 563398 | - | GT101 |
| pfam | B1_contig_1146 | B1_contig_1146_478 | 564384 | 564650 | - | Glycos_transf_1 | Glyco_trans_1_4 |
| NULL(UNKNOWN) | B1_contig_1146 | B1_contig_1146_479 | 564778 | 565506 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B1_contig_1146 | B1_contig_1146_480 | 565525 | 566700 | - | GT4 |
| CAZyme | B1_contig_1146 | B1_contig_1146_481 | 566718 | 567917 | - | GT4 |
| CAZyme | B1_contig_1146 | B1_contig_1146_482 | 567959 | 568987 | - | GT2 |
| NULL(UNKNOWN) | B1_contig_1146 | B1_contig_1146_483 | 569051 | 569257 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | B1_contig_1146 | B1_contig_1146_484 | 569486 | 570244 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B1_contig_1146 | B1_contig_1146_485 | 570262 | 571371 | - | GT4 |
| TC | B1_contig_1146 | B1_contig_1146_486 | 571390 | 572457 | - | 9.B.183.1.9 |
| CAZyme | B1_contig_1146 | B1_contig_1146_487 | 572483 | 573367 | - | GT2 |
| CAZyme | B1_contig_1146 | B1_contig_1146_488 | 573387 | 574493 | - | GT4 |
| CAZyme | B1_contig_1146 | B1_contig_1146_489 | 574459 | 575616 | - | GT4 |
| pfam | B1_contig_1146 | B1_contig_1146_490 | 575635 | 576279 | - | PglD_N |
| TC | B1_contig_1146 | B1_contig_1146_491 | 576282 | 576899 | - | 9.B.18.1.2 |
| TC | B1_contig_1146 | B1_contig_1146_492 | 577402 | 579267 | + | 3.A.1.135.5 |
Gene ID: B1_contig_1146_476
Type: TC
Location: 561853 - 562488 (-)
Type: TC
Location: 561853 - 562488 (-)
Gene ID: B1_contig_1146_477
Type: CAZyme
Location: 562499 - 563398 (-)
Type: CAZyme
Location: 562499 - 563398 (-)
Gene ID: B1_contig_1146_478
Type: pfam
Location: 564384 - 564650 (-)
Type: pfam
Location: 564384 - 564650 (-)
Gene ID: B1_contig_1146_479
Type:
Location: 564778 - 565506 (-)
Type:
Location: 564778 - 565506 (-)
Gene ID: B1_contig_1146_480
Type: CAZyme
Location: 565525 - 566700 (-)
Type: CAZyme
Location: 565525 - 566700 (-)
Gene ID: B1_contig_1146_481
Type: CAZyme
Location: 566718 - 567917 (-)
Type: CAZyme
Location: 566718 - 567917 (-)
Gene ID: B1_contig_1146_482
Type: CAZyme
Location: 567959 - 568987 (-)
Type: CAZyme
Location: 567959 - 568987 (-)
Gene ID: B1_contig_1146_483
Type:
Location: 569051 - 569257 (-)
Type:
Location: 569051 - 569257 (-)
Gene ID: B1_contig_1146_484
Type:
Location: 569486 - 570244 (-)
Type:
Location: 569486 - 570244 (-)
Gene ID: B1_contig_1146_485
Type: CAZyme
Location: 570262 - 571371 (-)
Type: CAZyme
Location: 570262 - 571371 (-)
Gene ID: B1_contig_1146_486
Type: TC
Location: 571390 - 572457 (-)
Type: TC
Location: 571390 - 572457 (-)
Gene ID: B1_contig_1146_487
Type: CAZyme
Location: 572483 - 573367 (-)
Type: CAZyme
Location: 572483 - 573367 (-)
Gene ID: B1_contig_1146_488
Type: CAZyme
Location: 573387 - 574493 (-)
Type: CAZyme
Location: 573387 - 574493 (-)
Gene ID: B1_contig_1146_489
Type: CAZyme
Location: 574459 - 575616 (-)
Type: CAZyme
Location: 574459 - 575616 (-)
Gene ID: B1_contig_1146_490
Type: pfam
Location: 575635 - 576279 (-)
Type: pfam
Location: 575635 - 576279 (-)
Gene ID: B1_contig_1146_491
Type: TC
Location: 576282 - 576899 (-)
Type: TC
Location: 576282 - 576899 (-)
Gene ID: B1_contig_1146_492
Type: TC
Location: 577402 - 579267 (+)
Type: TC
Location: 577402 - 579267 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Sarcina
Species
Sarcina perfringens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.