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Cluster: AG427_4_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_63978 k141_63978_3 3686 4168 - CBM50
pfam k141_63978 k141_63978_4 4237 5052 - TatD_DNase
pfam k141_63978 k141_63978_5 5177 6244 + LpxR
CAZyme k141_63978 k141_63978_6 6387 10187 + CBM32 | GH2
pfam k141_63978 k141_63978_7 10517 11200 - PEP-CTERM
NULL(UNKNOWN) k141_63978 k141_63978_8 11215 12246 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_63978 k141_63978_9 12366 13643 - GH29
STP k141_63978 k141_63978_10 14158 16833 + HATPase_c | HisKA
TF k141_63978 k141_63978_11 16848 17546 + Trans_reg_C
TC k141_63978 k141_63978_12 17701 18480 + 1.B.71.1.5
TC k141_63978 k141_63978_13 18594 20294 + 3.A.3.7.2
TC k141_63978 k141_63978_14 20325 22439 + 3.A.3.7.2
TC k141_63978 k141_63978_15 22469 23035 + 3.A.3.7.2
CAZyme k141_63978 k141_63978_16 23184 24788 - GH27
TC k141_63978 k141_63978_17 24979 27561 + 3.A.9.1.2
Gene ID: k141_63978_3
Type: CAZyme
Location: 3686 - 4168 (-)
Gene ID: k141_63978_4
Type: pfam
Location: 4237 - 5052 (-)
Gene ID: k141_63978_5
Type: pfam
Location: 5177 - 6244 (+)
Gene ID: k141_63978_6
Type: CAZyme
Location: 6387 - 10187 (+)
Gene ID: k141_63978_7
Type: pfam
Location: 10517 - 11200 (-)
Gene ID: k141_63978_8
Type:
Location: 11215 - 12246 (-)
Gene ID: k141_63978_9
Type: CAZyme
Location: 12366 - 13643 (-)
Gene ID: k141_63978_10
Type: STP
Location: 14158 - 16833 (+)
Gene ID: k141_63978_11
Type: TF
Location: 16848 - 17546 (+)
Gene ID: k141_63978_12
Type: TC
Location: 17701 - 18480 (+)
Gene ID: k141_63978_13
Type: TC
Location: 18594 - 20294 (+)
Gene ID: k141_63978_14
Type: TC
Location: 20325 - 22439 (+)
Gene ID: k141_63978_15
Type: TC
Location: 22469 - 23035 (+)
Gene ID: k141_63978_16
Type: CAZyme
Location: 23184 - 24788 (-)
Gene ID: k141_63978_17
Type: TC
Location: 24979 - 27561 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_63978_3 vegetarian > vegan 1.87234 0.01794
k141_63978_4 vegetarian > omnivore 1.00680 0.04819

🧭 Explore Read Mapping of CGC

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