Cluster: AG404_bin.37_sub_CGC56
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 23
- Substrate: arabinogalactan/pectin
- Genome ID: AG404_bin.37_sub
- CGC Family ID: CGCFAM_00212
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_335444 | k141_335444_2 | 911 | 2647 | - | PL1_2 |
| pfam | k141_335444 | k141_335444_3 | 2835 | 4829 | - | SusD_RagB | SusD-like_3 |
| TC | k141_335444 | k141_335444_4 | 4842 | 8282 | - | 1.B.14.6.1 |
| pfam | k141_335444 | k141_335444_5 | 8289 | 9212 | - | AP_endonuc_2 |
| pfam | k141_335444 | k141_335444_6 | 9375 | 11240 | - | SusD_RagB | SusD-like_3 |
| TC | k141_335444 | k141_335444_7 | 11254 | 14346 | - | 1.B.14.6.1 |
| CAZyme | k141_335444 | k141_335444_8 | 14425 | 16107 | - | PL1_2 |
| CAZyme | k141_335444 | k141_335444_9 | 16524 | 17456 | + | GH43_18 |
| CAZyme | k141_335444 | k141_335444_10 | 17469 | 20804 | + | GH142 | GH143 |
| CAZyme | k141_335444 | k141_335444_11 | 20915 | 23680 | + | CBM67 | GH78 |
| CAZyme | k141_335444 | k141_335444_12 | 23765 | 25096 | + | GH28 |
| CAZyme | k141_335444 | k141_335444_13 | 25074 | 27056 | + | CE19 |
| CAZyme | k141_335444 | k141_335444_14 | 27064 | 29508 | + | GH95 |
| CAZyme | k141_335444 | k141_335444_15 | 29662 | 30873 | + | GH105 |
| CAZyme | k141_335444 | k141_335444_16 | 30876 | 32348 | + | GH140 |
| CAZyme | k141_335444 | k141_335444_17 | 32345 | 36169 | + | CBM67 | GH33 | GH78 |
| NULL(UNKNOWN) | k141_335444 | k141_335444_18 | 36312 | 36545 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_335444 | k141_335444_19 | 36757 | 38355 | - | GH28 |
| CAZyme | k141_335444 | k141_335444_20 | 38426 | 40504 | + | GH127 |
| CAZyme | k141_335444 | k141_335444_21 | 40518 | 42362 | + | GH141 |
| CAZyme | k141_335444 | k141_335444_22 | 42368 | 44560 | + | GH78 |
| CAZyme | k141_335444 | k141_335444_23 | 44568 | 47267 | + | GH138 |
| CAZyme | k141_335444 | k141_335444_24 | 47426 | 51601 | + | CBM57 | CBM97 | GH137 | GH2 |
| CAZyme | k141_335444 | k141_335444_25 | 51730 | 54945 | + | GH2 |
| CAZyme | k141_335444 | k141_335444_26 | 54979 | 57822 | + | GH2 |
| CAZyme | k141_335444 | k141_335444_27 | 57999 | 61223 | + | GH106 |
| CAZyme | k141_335444 | k141_335444_28 | 61264 | 62715 | + | CE20 |
| CAZyme | k141_335444 | k141_335444_29 | 62717 | 64948 | + | GH139 |
| CAZyme | k141_335444 | k141_335444_30 | 64956 | 67550 | + | GH2 |
Gene ID: k141_335444_2
Type: CAZyme
Location: 911 - 2647 (-)
Type: CAZyme
Location: 911 - 2647 (-)
Gene ID: k141_335444_3
Type: pfam
Location: 2835 - 4829 (-)
Type: pfam
Location: 2835 - 4829 (-)
Gene ID: k141_335444_4
Type: TC
Location: 4842 - 8282 (-)
Type: TC
Location: 4842 - 8282 (-)
Gene ID: k141_335444_5
Type: pfam
Location: 8289 - 9212 (-)
Type: pfam
Location: 8289 - 9212 (-)
Gene ID: k141_335444_6
Type: pfam
Location: 9375 - 11240 (-)
Type: pfam
Location: 9375 - 11240 (-)
Gene ID: k141_335444_7
Type: TC
Location: 11254 - 14346 (-)
Type: TC
Location: 11254 - 14346 (-)
Gene ID: k141_335444_8
Type: CAZyme
Location: 14425 - 16107 (-)
Type: CAZyme
Location: 14425 - 16107 (-)
Gene ID: k141_335444_9
Type: CAZyme
Location: 16524 - 17456 (+)
Type: CAZyme
Location: 16524 - 17456 (+)
Gene ID: k141_335444_10
Type: CAZyme
Location: 17469 - 20804 (+)
Type: CAZyme
Location: 17469 - 20804 (+)
Gene ID: k141_335444_11
Type: CAZyme
Location: 20915 - 23680 (+)
Type: CAZyme
Location: 20915 - 23680 (+)
Gene ID: k141_335444_12
Type: CAZyme
Location: 23765 - 25096 (+)
Type: CAZyme
Location: 23765 - 25096 (+)
Gene ID: k141_335444_13
Type: CAZyme
Location: 25074 - 27056 (+)
Type: CAZyme
Location: 25074 - 27056 (+)
Gene ID: k141_335444_14
Type: CAZyme
Location: 27064 - 29508 (+)
Type: CAZyme
Location: 27064 - 29508 (+)
Gene ID: k141_335444_15
Type: CAZyme
Location: 29662 - 30873 (+)
Type: CAZyme
Location: 29662 - 30873 (+)
Gene ID: k141_335444_16
Type: CAZyme
Location: 30876 - 32348 (+)
Type: CAZyme
Location: 30876 - 32348 (+)
Gene ID: k141_335444_17
Type: CAZyme
Location: 32345 - 36169 (+)
Type: CAZyme
Location: 32345 - 36169 (+)
Gene ID: k141_335444_18
Type:
Location: 36312 - 36545 (+)
Type:
Location: 36312 - 36545 (+)
Gene ID: k141_335444_19
Type: CAZyme
Location: 36757 - 38355 (-)
Type: CAZyme
Location: 36757 - 38355 (-)
Gene ID: k141_335444_20
Type: CAZyme
Location: 38426 - 40504 (+)
Type: CAZyme
Location: 38426 - 40504 (+)
Gene ID: k141_335444_21
Type: CAZyme
Location: 40518 - 42362 (+)
Type: CAZyme
Location: 40518 - 42362 (+)
Gene ID: k141_335444_22
Type: CAZyme
Location: 42368 - 44560 (+)
Type: CAZyme
Location: 42368 - 44560 (+)
Gene ID: k141_335444_23
Type: CAZyme
Location: 44568 - 47267 (+)
Type: CAZyme
Location: 44568 - 47267 (+)
Gene ID: k141_335444_24
Type: CAZyme
Location: 47426 - 51601 (+)
Type: CAZyme
Location: 47426 - 51601 (+)
Gene ID: k141_335444_25
Type: CAZyme
Location: 51730 - 54945 (+)
Type: CAZyme
Location: 51730 - 54945 (+)
Gene ID: k141_335444_26
Type: CAZyme
Location: 54979 - 57822 (+)
Type: CAZyme
Location: 54979 - 57822 (+)
Gene ID: k141_335444_27
Type: CAZyme
Location: 57999 - 61223 (+)
Type: CAZyme
Location: 57999 - 61223 (+)
Gene ID: k141_335444_28
Type: CAZyme
Location: 61264 - 62715 (+)
Type: CAZyme
Location: 61264 - 62715 (+)
Gene ID: k141_335444_29
Type: CAZyme
Location: 62717 - 64948 (+)
Type: CAZyme
Location: 62717 - 64948 (+)
Gene ID: k141_335444_30
Type: CAZyme
Location: 64956 - 67550 (+)
Type: CAZyme
Location: 64956 - 67550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola cellulolyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.